JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MEIS3_chr19_47398124_47424527	0/0	t0038	895	1	0	1	0	0	0	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0039	896	1	1	0	0	0	0	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0040	897	1	1	0	0	0	0	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0041	896	1	0	0	0	0	1	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0042	896	1	0	0	0	0	1	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0043	897	1	0	1	0	0	0	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0044	896	1	0	0	1	0	0	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0045	896	1	0	0	1	0	0	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0046	897	1	0	1	0	0	0	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0047	895	1	0	1	0	0	0	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0048	894	1	1	0	0	0	0	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0049	897	1	0	0	1	0	0	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0050	895	1	1	0	0	0	0	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0051	896	1	0	0	1	0	0	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0052	896	1	0	0	0	1	0	copy fasta	MEIS3	chr19	47398124	47424527
MELK_chr9_36567895_36682682	1/1	t0001	497	212	66	38	72	1	33	copy fasta	MELK	chr9	36567895	36682682
MELK_chr9_36567895_36682682	0/0	t0002	497	12	3	1	7	0	1	copy fasta	MELK	chr9	36567895	36682682
MELK_chr9_36567895_36682682	0/0	t0003	494	9	9	0	0	0	0	copy fasta	MELK	chr9	36567895	36682682
MELK_chr9_36567895_36682682	0/0	t0004	497	5	5	0	0	0	0	copy fasta	MELK	chr9	36567895	36682682
MELK_chr9_36567895_36682682	0/0	t0005	497	1	1	0	0	0	0	copy fasta	MELK	chr9	36567895	36682682
MELK_chr9_36567895_36682682	0/0	t0006	497	1	0	0	0	1	0	copy fasta	MELK	chr9	36567895	36682682
MELK_chr9_36567895_36682682	0/0	t0007	497	1	0	0	1	0	0	copy fasta	MELK	chr9	36567895	36682682
MELK_chr9_36567895_36682682	0/0	t0008	497	1	0	1	0	0	0	copy fasta	MELK	chr9	36567895	36682682
MELTF_chr3_196996740_197034817	0/1	t0001	1748	135	1	34	85	4	10	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0002	1748	34	1	9	9	3	12	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	1/0	t0003	1748	27	6	9	5	2	4	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0004	1748	23	4	13	2	3	1	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0005	1748	23	9	0	13	0	1	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0006	1748	20	18	2	0	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0007	1748	14	2	1	9	0	2	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0008	1748	12	2	5	0	1	4	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0009	1744	11	0	0	11	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0010	1748	9	6	0	3	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0011	1748	9	0	3	2	0	4	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0012	1748	9	1	1	3	0	4	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0013	1744	8	8	0	0	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0014	1748	7	7	0	0	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0015	1748	6	1	3	0	0	2	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0016	1748	6	0	0	6	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0017	1744	5	0	0	5	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0018	1748	5	0	1	3	0	1	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0019	1748	4	4	0	0	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0020	1748	3	0	1	2	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0021	1748	3	2	1	0	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0022	1748	3	3	0	0	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0023	1748	3	0	0	3	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0024	1748	3	0	0	3	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0025	1748	2	0	0	2	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0026	1744	2	0	0	2	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0027	1748	2	0	0	2	0	0	copy fasta	MELTF	chr3	196996740	197034817