JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MELTF_chr3_196996740_197034817	0/0	t0028	1744	2	0	0	2	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0029	1748	2	0	0	2	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0030	1748	2	0	0	2	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0031	1748	1	0	0	1	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0032	1748	1	0	1	0	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0033	1748	1	0	0	1	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0034	1748	1	0	0	1	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0035	1748	1	0	0	1	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0036	1767	1	1	0	0	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0037	1748	1	0	0	1	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0038	1748	1	0	0	0	0	1	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0039	1748	1	0	0	1	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0040	1748	1	0	0	1	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0041	1744	1	0	0	1	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0042	1744	1	0	0	1	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0043	1748	1	1	0	0	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0044	1748	1	0	0	0	0	1	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0045	1744	1	0	0	0	0	1	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0046	1748	1	1	0	0	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0047	1748	1	1	0	0	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0048	1748	1	1	0	0	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0049	1748	1	1	0	0	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0050	1748	1	1	0	0	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0051	1748	1	1	0	0	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0052	1748	1	0	0	1	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0053	1748	1	0	0	0	1	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0054	1748	1	1	0	0	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0055	1748	1	1	0	0	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	t0056	1748	1	1	0	0	0	0	copy fasta	MELTF	chr3	196996740	197034817
MEMO1_chr2_31862823_32016008	1/1	t0001	623	301	77	62	124	12	24	copy fasta	MEMO1	chr2	31862823	32016008
MEMO1_chr2_31862823_32016008	0/0	t0002	623	3	3	0	0	0	0	copy fasta	MEMO1	chr2	31862823	32016008
MEN1_chr11_64798516_64815551	1/1	t0001	880	350	87	58	148	15	40	copy fasta	MEN1	chr11	64798516	64815551
MEN1_chr11_64798516_64815551	0/0	t0002	877	63	0	19	44	0	0	copy fasta	MEN1	chr11	64798516	64815551
MEN1_chr11_64798516_64815551	0/0	t0003	880	9	1	0	4	0	4	copy fasta	MEN1	chr11	64798516	64815551
MEN1_chr11_64798516_64815551	0/0	t0004	880	4	4	0	0	0	0	copy fasta	MEN1	chr11	64798516	64815551
MEN1_chr11_64798516_64815551	0/0	t0005	880	2	2	0	0	0	0	copy fasta	MEN1	chr11	64798516	64815551
MEN1_chr11_64798516_64815551	0/0	t0006	880	2	0	1	0	1	0	copy fasta	MEN1	chr11	64798516	64815551
MEN1_chr11_64798516_64815551	0/0	t0007	880	1	0	0	1	0	0	copy fasta	MEN1	chr11	64798516	64815551
MEN1_chr11_64798516_64815551	0/0	t0008	880	1	1	0	0	0	0	copy fasta	MEN1	chr11	64798516	64815551
MEN1_chr11_64798516_64815551	0/0	t0009	880	1	1	0	0	0	0	copy fasta	MEN1	chr11	64798516	64815551
MEN1_chr11_64798516_64815551	0/0	t0010	880	1	0	0	1	0	0	copy fasta	MEN1	chr11	64798516	64815551
MEOX1_chr17_43635389_43666922	1/1	t0001	1910	292	83	50	117	5	35	copy fasta	MEOX1	chr17	43635389	43666922
MEOX1_chr17_43635389_43666922	0/0	t0002	1910	63	1	22	35	1	4	copy fasta	MEOX1	chr17	43635389	43666922
MEOX1_chr17_43635389_43666922	0/0	t0003	1910	6	0	0	0	0	6	copy fasta	MEOX1	chr17	43635389	43666922
MEOX1_chr17_43635389_43666922	0/0	t0004	1891	6	0	0	2	3	1	copy fasta	MEOX1	chr17	43635389	43666922
MEOX1_chr17_43635389_43666922	0/0	t0005	1910	2	2	0	0	0	0	copy fasta	MEOX1	chr17	43635389	43666922
MEOX1_chr17_43635389_43666922	0/0	t0006	1910	1	1	0	0	0	0	copy fasta	MEOX1	chr17	43635389	43666922
MEOX1_chr17_43635389_43666922	0/0	t0007	1910	1	0	0	1	0	0	copy fasta	MEOX1	chr17	43635389	43666922
MEOX1_chr17_43635389_43666922	0/0	t0008	1910	1	1	0	0	0	0	copy fasta	MEOX1	chr17	43635389	43666922
MEOX1_chr17_43635389_43666922	0/0	t0009	1910	1	1	0	0	0	0	copy fasta	MEOX1	chr17	43635389	43666922