Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARHGAP21_chr10_24578614_24728887	0/0	t0015	1502	1	0	0	1	0	0	copy fasta	ARHGAP21	chr10	24578614	24728887
ARHGAP21_chr10_24578614_24728887	0/0	t0016	1502	1	0	0	1	0	0	copy fasta	ARHGAP21	chr10	24578614	24728887
ARHGAP22_chr10_48441036_48610073	0/0	t0001	633	81	20	18	25	4	14	copy fasta	ARHGAP22	chr10	48441036	48610073
ARHGAP22_chr10_48441036_48610073	0/1	t0002	633	73	13	27	17	5	10	copy fasta	ARHGAP22	chr10	48441036	48610073
ARHGAP22_chr10_48441036_48610073	0/0	t0003	633	36	10	8	14	0	4	copy fasta	ARHGAP22	chr10	48441036	48610073
ARHGAP22_chr10_48441036_48610073	1/0	t0004	633	31	23	3	0	0	4	copy fasta	ARHGAP22	chr10	48441036	48610073
ARHGAP22_chr10_48441036_48610073	0/0	t0005	633	29	3	6	11	3	6	copy fasta	ARHGAP22	chr10	48441036	48610073
ARHGAP22_chr10_48441036_48610073	0/0	t0006	633	5	5	0	0	0	0	copy fasta	ARHGAP22	chr10	48441036	48610073
ARHGAP22_chr10_48441036_48610073	0/0	t0007	624	3	3	0	0	0	0	copy fasta	ARHGAP22	chr10	48441036	48610073
ARHGAP22_chr10_48441036_48610073	0/0	t0008	633	3	3	0	0	0	0	copy fasta	ARHGAP22	chr10	48441036	48610073
ARHGAP22_chr10_48441036_48610073	0/0	t0009	624	2	2	0	0	0	0	copy fasta	ARHGAP22	chr10	48441036	48610073
ARHGAP22_chr10_48441036_48610073	0/0	t0010	633	2	2	0	0	0	0	copy fasta	ARHGAP22	chr10	48441036	48610073
ARHGAP22_chr10_48441036_48610073	0/0	t0011	633	1	0	0	1	0	0	copy fasta	ARHGAP22	chr10	48441036	48610073
ARHGAP22_chr10_48441036_48610073	0/0	t0012	633	1	1	0	0	0	0	copy fasta	ARHGAP22	chr10	48441036	48610073
ARHGAP22_chr10_48441036_48610073	0/0	t0013	633	1	1	0	0	0	0	copy fasta	ARHGAP22	chr10	48441036	48610073
ARHGAP22_chr10_48441036_48610073	0/0	t0014	633	1	1	0	0	0	0	copy fasta	ARHGAP22	chr10	48441036	48610073
ARHGAP22_chr10_48441036_48610073	0/0	t0015	624	1	1	0	0	0	0	copy fasta	ARHGAP22	chr10	48441036	48610073
ARHGAP23_chr17_38423464_38517385	0/1	t0001	1436	227	60	52	78	13	23	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	t0002	1436	36	1	5	19	0	11	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	t0003	1436	23	16	4	1	1	1	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	t0004	1433	5	4	1	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	t0005	1436	4	3	1	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	t0006	1432	4	4	0	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	t0007	1436	2	0	0	2	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	t0008	1436	1	0	1	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	t0009	1436	1	0	0	1	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	t0010	1436	1	0	0	1	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	t0011	1436	1	1	0	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	t0012	1436	1	0	0	0	0	1	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	t0013	1436	1	1	0	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	t0014	1436	1	0	0	0	0	1	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	t0015	1436	1	0	0	0	0	1	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP24_chr4_85470150_86007666	0/0	t0001	2375	52	19	15	6	4	8	copy fasta	ARHGAP24	chr4	85470150	86007666
ARHGAP24_chr4_85470150_86007666	0/0	t0002	2373	17	4	7	1	0	5	copy fasta	ARHGAP24	chr4	85470150	86007666
ARHGAP24_chr4_85470150_86007666	0/0	t0003	2373	9	8	1	0	0	0	copy fasta	ARHGAP24	chr4	85470150	86007666
ARHGAP24_chr4_85470150_86007666	0/0	t0004	2373	6	6	0	0	0	0	copy fasta	ARHGAP24	chr4	85470150	86007666
ARHGAP24_chr4_85470150_86007666	0/0	t0005	2375	5	3	1	0	0	1	copy fasta	ARHGAP24	chr4	85470150	86007666
ARHGAP24_chr4_85470150_86007666	0/0	t0006	2373	2	2	0	0	0	0	copy fasta	ARHGAP24	chr4	85470150	86007666
ARHGAP24_chr4_85470150_86007666	0/0	t0007	2373	2	1	1	0	0	0	copy fasta	ARHGAP24	chr4	85470150	86007666
ARHGAP24_chr4_85470150_86007666	0/0	t0008	2373	2	2	0	0	0	0	copy fasta	ARHGAP24	chr4	85470150	86007666
ARHGAP24_chr4_85470150_86007666	0/0	t0009	2375	1	1	0	0	0	0	copy fasta	ARHGAP24	chr4	85470150	86007666
ARHGAP24_chr4_85470150_86007666	0/0	t0010	2375	1	1	0	0	0	0	copy fasta	ARHGAP24	chr4	85470150	86007666
ARHGAP24_chr4_85470150_86007666	0/0	t0011	2375	1	1	0	0	0	0	copy fasta	ARHGAP24	chr4	85470150	86007666
ARHGAP24_chr4_85470150_86007666	0/0	t0012	2373	1	0	1	0	0	0	copy fasta	ARHGAP24	chr4	85470150	86007666
ARHGAP24_chr4_85470150_86007666	0/0	t0013	2373	1	0	0	1	0	0	copy fasta	ARHGAP24	chr4	85470150	86007666
ARHGAP24_chr4_85470150_86007666	0/0	t0014	2373	1	1	0	0	0	0	copy fasta	ARHGAP24	chr4	85470150	86007666
ARHGAP24_chr4_85470150_86007666	0/0	t0015	2375	1	1	0	0	0	0	copy fasta	ARHGAP24	chr4	85470150	86007666
ARHGAP24_chr4_85470150_86007666	0/0	t0016	2373	1	1	0	0	0	0	copy fasta	ARHGAP24	chr4	85470150	86007666
ARHGAP24_chr4_85470150_86007666	0/0	t0017	2373	1	1	0	0	0	0	copy fasta	ARHGAP24	chr4	85470150	86007666
ARHGAP24_chr4_85470150_86007666	0/0	t0018	2373	1	1	0	0	0	0	copy fasta	ARHGAP24	chr4	85470150	86007666