JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MEOX1_chr17_43635389_43666922	0/0	t0010	1910	1	0	1	0	0	0	copy fasta	MEOX1	chr17	43635389	43666922
MEOX1_chr17_43635389_43666922	0/0	t0011	1910	1	0	0	1	0	0	copy fasta	MEOX1	chr17	43635389	43666922
MEOX1_chr17_43635389_43666922	0/0	t0012	1910	1	1	0	0	0	0	copy fasta	MEOX1	chr17	43635389	43666922
MEOX1_chr17_43635389_43666922	0/0	t0013	1910	1	1	0	0	0	0	copy fasta	MEOX1	chr17	43635389	43666922
MEOX1_chr17_43635389_43666922	0/0	t0014	1910	1	0	1	0	0	0	copy fasta	MEOX1	chr17	43635389	43666922
MEOX1_chr17_43635389_43666922	0/0	t0015	1910	1	0	0	0	1	0	copy fasta	MEOX1	chr17	43635389	43666922
MEOX1_chr17_43635389_43666922	0/0	t0016	1910	1	1	0	0	0	0	copy fasta	MEOX1	chr17	43635389	43666922
MEOX2_chr7_15606212_15691683	0/0	t0001	1459	97	18	25	36	7	11	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	1/0	t0002	1457	52	1	11	23	2	14	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	t0003	1459	51	0	2	48	0	1	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	t0004	1457	19	4	6	5	1	3	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	t0005	1457	14	0	5	6	2	1	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	t0006	1459	12	6	1	2	1	2	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	t0007	1459	9	7	2	0	0	0	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	t0008	1459	9	6	2	0	0	1	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	t0009	1457	8	6	2	0	0	0	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/1	t0010	1457	8	2	3	0	1	1	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	t0011	1457	7	0	3	4	0	0	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	t0012	1460	6	4	0	1	0	1	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	t0013	1460	5	1	1	0	0	3	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	t0014	1458	5	4	1	0	0	0	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	t0015	1461	4	3	0	1	0	0	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	t0016	1461	4	4	0	0	0	0	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	t0017	1459	4	0	0	4	0	0	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	t0018	1459	4	1	0	2	0	1	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	t0019	1459	3	2	1	0	0	0	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	t0020	1457	3	3	0	0	0	0	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	t0021	1457	3	3	0	0	0	0	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	t0022	1457	3	1	2	0	0	0	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	t0023	1461	2	2	0	0	0	0	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	t0024	1459	2	0	0	2	0	0	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	t0025	1457	2	0	0	0	2	0	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	t0026	1457	2	2	0	0	0	0	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	t0027	1460	1	1	0	0	0	0	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	t0028	1460	1	0	0	0	0	1	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	t0029	1460	1	1	0	0	0	0	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	t0030	1460	1	0	0	1	0	0	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	t0031	1460	1	1	0	0	0	0	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	t0032	1459	1	1	0	0	0	0	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	t0033	1459	1	0	1	0	0	0	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	t0034	1458	1	1	0	0	0	0	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	t0035	1458	1	1	0	0	0	0	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	t0036	1458	1	1	0	0	0	0	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	t0037	1457	1	1	0	0	0	0	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	t0038	1457	1	1	0	0	0	0	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	t0039	1457	1	0	0	1	0	0	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	t0040	1457	1	1	0	0	0	0	copy fasta	MEOX2	chr7	15606212	15691683
MEP1A_chr6_46788389_46844778	0/0	t0001	665	128	29	19	62	4	14	copy fasta	MEP1A	chr6	46788389	46844778
MEP1A_chr6_46788389_46844778	1/0	t0002	653	110	21	21	54	3	10	copy fasta	MEP1A	chr6	46788389	46844778
MEP1A_chr6_46788389_46844778	0/1	t0003	665	96	24	18	29	7	17	copy fasta	MEP1A	chr6	46788389	46844778