JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MEP1A_chr6_46788389_46844778	0/0	t0004	653	7	6	1	0	0	0	copy fasta	MEP1A	chr6	46788389	46844778
MEP1A_chr6_46788389_46844778	0/0	t0005	653	4	4	0	0	0	0	copy fasta	MEP1A	chr6	46788389	46844778
MEP1A_chr6_46788389_46844778	0/0	t0006	653	2	2	0	0	0	0	copy fasta	MEP1A	chr6	46788389	46844778
MEP1A_chr6_46788389_46844778	0/0	t0007	665	1	0	1	0	0	0	copy fasta	MEP1A	chr6	46788389	46844778
MEP1A_chr6_46788389_46844778	0/0	t0008	665	1	0	0	1	0	0	copy fasta	MEP1A	chr6	46788389	46844778
MEP1A_chr6_46788389_46844778	0/0	t0009	665	1	1	0	0	0	0	copy fasta	MEP1A	chr6	46788389	46844778
MEP1A_chr6_46788389_46844778	0/0	t0010	653	1	1	0	0	0	0	copy fasta	MEP1A	chr6	46788389	46844778
MEP1A_chr6_46788389_46844778	0/0	t0011	665	1	0	0	0	0	1	copy fasta	MEP1A	chr6	46788389	46844778
MEP1B_chr18_32185039_32225404	1/1	t0001	192	335	80	60	140	18	35	copy fasta	MEP1B	chr18	32185039	32225404
MEP1B_chr18_32185039_32225404	0/0	t0002	192	14	14	0	0	0	0	copy fasta	MEP1B	chr18	32185039	32225404
MEP1B_chr18_32185039_32225404	0/0	t0003	192	1	0	0	0	0	1	copy fasta	MEP1B	chr18	32185039	32225404
MEPCE_chr7_100424831_100439118	1/1	t0001	753	267	62	42	114	9	38	copy fasta	MEPCE	chr7	100424831	100439118
MEPCE_chr7_100424831_100439118	0/0	t0002	769	20	1	7	1	5	6	copy fasta	MEPCE	chr7	100424831	100439118
MEPCE_chr7_100424831_100439118	0/0	t0003	751	15	11	4	0	0	0	copy fasta	MEPCE	chr7	100424831	100439118
MEPCE_chr7_100424831_100439118	0/0	t0004	753	14	0	0	13	1	0	copy fasta	MEPCE	chr7	100424831	100439118
MEPCE_chr7_100424831_100439118	0/0	t0005	769	11	11	0	0	0	0	copy fasta	MEPCE	chr7	100424831	100439118
MEPCE_chr7_100424831_100439118	0/0	t0006	754	4	1	2	1	0	0	copy fasta	MEPCE	chr7	100424831	100439118
MEPCE_chr7_100424831_100439118	0/0	t0007	753	3	3	0	0	0	0	copy fasta	MEPCE	chr7	100424831	100439118
MEPCE_chr7_100424831_100439118	0/0	t0008	753	3	3	0	0	0	0	copy fasta	MEPCE	chr7	100424831	100439118
MEPCE_chr7_100424831_100439118	0/0	t0009	753	1	0	0	1	0	0	copy fasta	MEPCE	chr7	100424831	100439118
MEPCE_chr7_100424831_100439118	0/0	t0010	769	1	1	0	0	0	0	copy fasta	MEPCE	chr7	100424831	100439118
MEPCE_chr7_100424831_100439118	0/0	t0011	753	1	0	0	0	1	0	copy fasta	MEPCE	chr7	100424831	100439118
MEPCE_chr7_100424831_100439118	0/0	t0012	769	1	0	1	0	0	0	copy fasta	MEPCE	chr7	100424831	100439118
MEPCE_chr7_100424831_100439118	0/0	t0013	753	1	1	0	0	0	0	copy fasta	MEPCE	chr7	100424831	100439118
MEPE_chr4_87827969_87851792	1/1	t0001	405	417	94	75	196	15	35	copy fasta	MEPE	chr4	87827969	87851792
MEPE_chr4_87827969_87851792	0/0	t0002	405	31	2	5	12	1	11	copy fasta	MEPE	chr4	87827969	87851792
MEPE_chr4_87827969_87851792	0/0	t0003	405	2	2	0	0	0	0	copy fasta	MEPE	chr4	87827969	87851792
MERTK_chr2_111893607_112034561	1/1	t0001	827	218	69	47	67	10	23	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	t0002	828	43	1	16	16	2	8	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	t0003	827	16	11	1	1	2	1	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	t0004	827	4	4	0	0	0	0	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	t0005	827	2	1	1	0	0	0	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	t0006	827	2	0	2	0	0	0	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	t0007	827	1	0	0	0	0	1	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	t0008	827	1	0	0	0	0	1	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	t0009	827	1	0	1	0	0	0	copy fasta	MERTK	chr2	111893607	112034561
MESD_chr15_80970752_80994819	1/0	t0001	3496	202	31	37	105	7	21	copy fasta	MESD	chr15	80970752	80994819
MESD_chr15_80970752_80994819	0/0	t0002	3496	54	9	5	34	2	4	copy fasta	MESD	chr15	80970752	80994819
MESD_chr15_80970752_80994819	0/0	t0003	3496	41	1	9	27	1	3	copy fasta	MESD	chr15	80970752	80994819
MESD_chr15_80970752_80994819	0/1	t0004	3496	31	0	19	0	2	9	copy fasta	MESD	chr15	80970752	80994819
MESD_chr15_80970752_80994819	0/0	t0005	3496	16	12	3	0	1	0	copy fasta	MESD	chr15	80970752	80994819
MESD_chr15_80970752_80994819	0/0	t0006	3496	12	12	0	0	0	0	copy fasta	MESD	chr15	80970752	80994819
MESD_chr15_80970752_80994819	0/0	t0007	3496	9	8	1	0	0	0	copy fasta	MESD	chr15	80970752	80994819
MESD_chr15_80970752_80994819	0/0	t0008	3496	6	0	0	6	0	0	copy fasta	MESD	chr15	80970752	80994819
MESD_chr15_80970752_80994819	0/0	t0009	3496	5	4	1	0	0	0	copy fasta	MESD	chr15	80970752	80994819
MESD_chr15_80970752_80994819	0/0	t0010	3496	4	0	0	0	0	4	copy fasta	MESD	chr15	80970752	80994819
MESD_chr15_80970752_80994819	0/0	t0011	3496	4	0	0	4	0	0	copy fasta	MESD	chr15	80970752	80994819
MESD_chr15_80970752_80994819	0/0	t0012	3496	3	3	0	0	0	0	copy fasta	MESD	chr15	80970752	80994819
MESD_chr15_80970752_80994819	0/0	t0013	3496	3	3	0	0	0	0	copy fasta	MESD	chr15	80970752	80994819
MESD_chr15_80970752_80994819	0/0	t0014	3496	2	2	0	0	0	0	copy fasta	MESD	chr15	80970752	80994819