JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MESD_chr15_80970752_80994819	0/0	t0015	3496	2	0	0	2	0	0	copy fasta	MESD	chr15	80970752	80994819
MESD_chr15_80970752_80994819	0/0	t0016	3496	2	0	2	0	0	0	copy fasta	MESD	chr15	80970752	80994819
MESD_chr15_80970752_80994819	0/0	t0017	3496	2	0	0	2	0	0	copy fasta	MESD	chr15	80970752	80994819
MESD_chr15_80970752_80994819	0/0	t0018	3496	2	2	0	0	0	0	copy fasta	MESD	chr15	80970752	80994819
MESD_chr15_80970752_80994819	0/0	t0019	3496	2	2	0	0	0	0	copy fasta	MESD	chr15	80970752	80994819
MESD_chr15_80970752_80994819	0/0	t0020	3496	2	2	0	0	0	0	copy fasta	MESD	chr15	80970752	80994819
MESD_chr15_80970752_80994819	0/0	t0021	3496	1	1	0	0	0	0	copy fasta	MESD	chr15	80970752	80994819
MESD_chr15_80970752_80994819	0/0	t0022	3496	1	1	0	0	0	0	copy fasta	MESD	chr15	80970752	80994819
MESD_chr15_80970752_80994819	0/0	t0023	3496	1	1	0	0	0	0	copy fasta	MESD	chr15	80970752	80994819
MESD_chr15_80970752_80994819	0/0	t0024	3496	1	0	0	0	1	0	copy fasta	MESD	chr15	80970752	80994819
MESD_chr15_80970752_80994819	0/0	t0025	3496	1	0	0	0	0	1	copy fasta	MESD	chr15	80970752	80994819
MESD_chr15_80970752_80994819	0/0	t0026	3496	1	0	1	0	0	0	copy fasta	MESD	chr15	80970752	80994819
MESD_chr15_80970752_80994819	0/0	t0027	3496	1	0	0	1	0	0	copy fasta	MESD	chr15	80970752	80994819
MESD_chr15_80970752_80994819	0/0	t0028	3496	1	1	0	0	0	0	copy fasta	MESD	chr15	80970752	80994819
MESD_chr15_80970752_80994819	0/0	t0029	3496	1	0	0	1	0	0	copy fasta	MESD	chr15	80970752	80994819
MESD_chr15_80970752_80994819	0/0	t0030	3496	1	0	1	0	0	0	copy fasta	MESD	chr15	80970752	80994819
MESD_chr15_80970752_80994819	0/0	t0031	3496	1	0	0	1	0	0	copy fasta	MESD	chr15	80970752	80994819
MESD_chr15_80970752_80994819	0/0	t0032	3496	1	0	1	0	0	0	copy fasta	MESD	chr15	80970752	80994819
MESD_chr15_80970752_80994819	0/0	t0033	3496	1	0	1	0	0	0	copy fasta	MESD	chr15	80970752	80994819
MESD_chr15_80970752_80994819	0/0	t0034	3496	1	0	1	0	0	0	copy fasta	MESD	chr15	80970752	80994819
MESD_chr15_80970752_80994819	0/0	t0035	3496	1	1	0	0	0	0	copy fasta	MESD	chr15	80970752	80994819
MESD_chr15_80970752_80994819	0/0	t0036	3496	1	0	0	1	0	0	copy fasta	MESD	chr15	80970752	80994819
MESP1_chr15_89744875_89756249	1/1	t0001	288	414	83	82	182	18	47	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	t0002	288	7	7	0	0	0	0	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	t0003	288	6	4	2	0	0	0	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	t0004	288	1	0	0	0	0	1	copy fasta	MESP1	chr15	89744875	89756249
MESP2_chr15_89771332_89783754	1/1	t0001	447	386	89	71	162	17	45	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	0/0	t0002	447	1	0	0	0	1	0	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	0/0	t0003	447	1	1	0	0	0	0	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	0/0	t0004	462	1	0	0	1	0	0	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	0/0	t0005	447	1	1	0	0	0	0	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	0/0	t0006	447	1	0	0	1	0	0	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	0/0	t0007	447	1	1	0	0	0	0	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	0/0	t0008	447	1	0	0	0	0	1	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	0/0	t0009	410	1	0	1	0	0	0	copy fasta	MESP2	chr15	89771332	89783754
MEST_chr7_130487085_130511465	0/1	t0001	1638	122	10	23	68	5	15	copy fasta	MEST	chr7	130487085	130511465
MEST_chr7_130487085_130511465	0/0	t0002	1639	98	43	14	23	11	7	copy fasta	MEST	chr7	130487085	130511465
MEST_chr7_130487085_130511465	1/0	t0003	1639	84	16	13	41	1	12	copy fasta	MEST	chr7	130487085	130511465
MEST_chr7_130487085_130511465	0/0	t0004	1632	21	0	7	9	1	4	copy fasta	MEST	chr7	130487085	130511465
MEST_chr7_130487085_130511465	0/0	t0005	1639	12	2	3	6	0	1	copy fasta	MEST	chr7	130487085	130511465
MEST_chr7_130487085_130511465	0/0	t0006	1640	12	4	4	2	0	2	copy fasta	MEST	chr7	130487085	130511465
MEST_chr7_130487085_130511465	0/0	t0007	1639	9	4	2	3	0	0	copy fasta	MEST	chr7	130487085	130511465
MEST_chr7_130487085_130511465	0/0	t0008	1640	6	0	0	4	0	2	copy fasta	MEST	chr7	130487085	130511465
MEST_chr7_130487085_130511465	0/0	t0009	1639	4	4	0	0	0	0	copy fasta	MEST	chr7	130487085	130511465
MEST_chr7_130487085_130511465	0/0	t0010	1639	3	3	0	0	0	0	copy fasta	MEST	chr7	130487085	130511465
MEST_chr7_130487085_130511465	0/0	t0011	1640	2	1	0	1	0	0	copy fasta	MEST	chr7	130487085	130511465
MEST_chr7_130487085_130511465	0/0	t0012	1639	2	2	0	0	0	0	copy fasta	MEST	chr7	130487085	130511465
MEST_chr7_130487085_130511465	0/0	t0013	1638	1	0	0	0	0	1	copy fasta	MEST	chr7	130487085	130511465
MEST_chr7_130487085_130511465	0/0	t0014	1638	1	0	0	1	0	0	copy fasta	MEST	chr7	130487085	130511465
MEST_chr7_130487085_130511465	0/0	t0015	1639	1	1	0	0	0	0	copy fasta	MEST	chr7	130487085	130511465