JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
METAP1D_chr2_171994953_172087430	0/0	t0001	2042	112	7	17	72	3	13	copy fasta	METAP1D	chr2	171994953	172087430
METAP1D_chr2_171994953_172087430	0/1	t0002	2042	106	25	27	41	4	8	copy fasta	METAP1D	chr2	171994953	172087430
METAP1D_chr2_171994953_172087430	0/0	t0003	2042	55	15	9	8	4	19	copy fasta	METAP1D	chr2	171994953	172087430
METAP1D_chr2_171994953_172087430	1/0	t0004	2042	44	16	7	16	1	3	copy fasta	METAP1D	chr2	171994953	172087430
METAP1D_chr2_171994953_172087430	0/0	t0005	2042	18	17	1	0	0	0	copy fasta	METAP1D	chr2	171994953	172087430
METAP1D_chr2_171994953_172087430	0/0	t0006	2042	4	0	2	2	0	0	copy fasta	METAP1D	chr2	171994953	172087430
METAP1D_chr2_171994953_172087430	0/0	t0007	2042	3	0	0	3	0	0	copy fasta	METAP1D	chr2	171994953	172087430
METAP1D_chr2_171994953_172087430	0/0	t0008	2042	3	0	0	3	0	0	copy fasta	METAP1D	chr2	171994953	172087430
METAP1D_chr2_171994953_172087430	0/0	t0009	2042	2	0	0	2	0	0	copy fasta	METAP1D	chr2	171994953	172087430
METAP1D_chr2_171994953_172087430	0/0	t0010	2042	1	0	0	1	0	0	copy fasta	METAP1D	chr2	171994953	172087430
METAP1D_chr2_171994953_172087430	0/0	t0011	2042	1	0	0	1	0	0	copy fasta	METAP1D	chr2	171994953	172087430
METAP1D_chr2_171994953_172087430	0/0	t0012	2042	1	0	0	1	0	0	copy fasta	METAP1D	chr2	171994953	172087430
METAP1D_chr2_171994953_172087430	0/0	t0013	2042	1	0	1	0	0	0	copy fasta	METAP1D	chr2	171994953	172087430
METAP1D_chr2_171994953_172087430	0/0	t0014	2042	1	0	0	1	0	0	copy fasta	METAP1D	chr2	171994953	172087430
METAP1D_chr2_171994953_172087430	0/0	t0015	2042	1	0	0	1	0	0	copy fasta	METAP1D	chr2	171994953	172087430
METAP1D_chr2_171994953_172087430	0/0	t0016	2006	1	0	0	0	0	1	copy fasta	METAP1D	chr2	171994953	172087430
METAP1D_chr2_171994953_172087430	0/0	t0017	2042	1	0	0	0	0	1	copy fasta	METAP1D	chr2	171994953	172087430
METAP1D_chr2_171994953_172087430	0/0	t0018	2042	1	0	0	0	0	1	copy fasta	METAP1D	chr2	171994953	172087430
METAP1_chr4_98990721_99067809	0/0	t0001	1526	165	39	29	91	3	3	copy fasta	METAP1	chr4	98990721	99067809
METAP1_chr4_98990721_99067809	1/1	t0002	1526	154	46	32	42	8	24	copy fasta	METAP1	chr4	98990721	99067809
METAP1_chr4_98990721_99067809	0/0	t0003	1526	5	0	0	0	0	5	copy fasta	METAP1	chr4	98990721	99067809
METAP1_chr4_98990721_99067809	0/0	t0004	1526	4	4	0	0	0	0	copy fasta	METAP1	chr4	98990721	99067809
METAP1_chr4_98990721_99067809	0/0	t0005	1526	4	0	3	0	1	0	copy fasta	METAP1	chr4	98990721	99067809
METAP1_chr4_98990721_99067809	0/0	t0006	1511	1	0	0	1	0	0	copy fasta	METAP1	chr4	98990721	99067809
METAP1_chr4_98990721_99067809	0/0	t0007	1526	1	1	0	0	0	0	copy fasta	METAP1	chr4	98990721	99067809
METAP1_chr4_98990721_99067809	0/0	t0008	1526	1	1	0	0	0	0	copy fasta	METAP1	chr4	98990721	99067809
METAP1_chr4_98990721_99067809	0/0	t0009	1526	1	0	1	0	0	0	copy fasta	METAP1	chr4	98990721	99067809
METAP1_chr4_98990721_99067809	0/0	t0010	1526	1	1	0	0	0	0	copy fasta	METAP1	chr4	98990721	99067809
METAP1_chr4_98990721_99067809	0/0	t0011	1526	1	0	1	0	0	0	copy fasta	METAP1	chr4	98990721	99067809
METAP2_chr12_95469152_95520839	1/1	t0001	1964	293	48	67	135	13	28	copy fasta	METAP2	chr12	95469152	95520839
METAP2_chr12_95469152_95520839	0/0	t0002	1964	26	18	1	0	2	5	copy fasta	METAP2	chr12	95469152	95520839
METAP2_chr12_95469152_95520839	0/0	t0003	1965	24	1	5	13	0	5	copy fasta	METAP2	chr12	95469152	95520839
METAP2_chr12_95469152_95520839	0/0	t0004	1964	12	11	1	0	0	0	copy fasta	METAP2	chr12	95469152	95520839
METAP2_chr12_95469152_95520839	0/0	t0005	1964	6	0	0	6	0	0	copy fasta	METAP2	chr12	95469152	95520839
METAP2_chr12_95469152_95520839	0/0	t0006	1964	4	4	0	0	0	0	copy fasta	METAP2	chr12	95469152	95520839
METAP2_chr12_95469152_95520839	0/0	t0007	1964	4	0	0	0	1	3	copy fasta	METAP2	chr12	95469152	95520839
METAP2_chr12_95469152_95520839	0/0	t0008	1965	3	0	0	3	0	0	copy fasta	METAP2	chr12	95469152	95520839
METAP2_chr12_95469152_95520839	0/0	t0009	1964	1	0	0	1	0	0	copy fasta	METAP2	chr12	95469152	95520839
METAP2_chr12_95469152_95520839	0/0	t0010	1964	1	1	0	0	0	0	copy fasta	METAP2	chr12	95469152	95520839
METAP2_chr12_95469152_95520839	0/0	t0011	1964	1	0	0	1	0	0	copy fasta	METAP2	chr12	95469152	95520839
METAP2_chr12_95469152_95520839	0/0	t0012	1964	1	0	0	0	0	1	copy fasta	METAP2	chr12	95469152	95520839
METAP2_chr12_95469152_95520839	0/0	t0013	1932	1	1	0	0	0	0	copy fasta	METAP2	chr12	95469152	95520839
METAP2_chr12_95469152_95520839	0/0	t0014	1964	1	0	0	1	0	0	copy fasta	METAP2	chr12	95469152	95520839
METAP2_chr12_95469152_95520839	0/0	t0015	1964	1	1	0	0	0	0	copy fasta	METAP2	chr12	95469152	95520839
METAP2_chr12_95469152_95520839	0/0	t0016	1964	1	0	0	1	0	0	copy fasta	METAP2	chr12	95469152	95520839
METAP2_chr12_95469152_95520839	0/0	t0017	1964	1	0	0	1	0	0	copy fasta	METAP2	chr12	95469152	95520839
METAP2_chr12_95469152_95520839	0/0	t0018	1964	1	1	0	0	0	0	copy fasta	METAP2	chr12	95469152	95520839
METRNL_chr17_83074609_83100122	0/0	t0001	755	163	27	22	96	4	14	copy fasta	METRNL	chr17	83074609	83100122
METRNL_chr17_83074609_83100122	0/1	t0002	755	159	34	34	52	12	26	copy fasta	METRNL	chr17	83074609	83100122
METRNL_chr17_83074609_83100122	0/0	t0003	755	12	3	0	7	2	0	copy fasta	METRNL	chr17	83074609	83100122