JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
METRNL_chr17_83074609_83100122	0/0	t0004	756	12	1	2	5	0	4	copy fasta	METRNL	chr17	83074609	83100122
METRNL_chr17_83074609_83100122	0/0	t0005	767	10	0	5	5	0	0	copy fasta	METRNL	chr17	83074609	83100122
METRNL_chr17_83074609_83100122	0/0	t0006	755	8	5	3	0	0	0	copy fasta	METRNL	chr17	83074609	83100122
METRNL_chr17_83074609_83100122	0/0	t0007	756	7	5	2	0	0	0	copy fasta	METRNL	chr17	83074609	83100122
METRNL_chr17_83074609_83100122	0/0	t0008	755	4	0	0	4	0	0	copy fasta	METRNL	chr17	83074609	83100122
METRNL_chr17_83074609_83100122	0/0	t0009	755	3	3	0	0	0	0	copy fasta	METRNL	chr17	83074609	83100122
METRNL_chr17_83074609_83100122	0/0	t0010	756	2	2	0	0	0	0	copy fasta	METRNL	chr17	83074609	83100122
METRNL_chr17_83074609_83100122	0/0	t0011	755	2	0	2	0	0	0	copy fasta	METRNL	chr17	83074609	83100122
METRNL_chr17_83074609_83100122	0/0	t0012	755	2	2	0	0	0	0	copy fasta	METRNL	chr17	83074609	83100122
METRNL_chr17_83074609_83100122	0/0	t0013	755	2	1	0	1	0	0	copy fasta	METRNL	chr17	83074609	83100122
METRNL_chr17_83074609_83100122	0/0	t0014	756	2	2	0	0	0	0	copy fasta	METRNL	chr17	83074609	83100122
METRNL_chr17_83074609_83100122	0/0	t0015	756	2	0	0	2	0	0	copy fasta	METRNL	chr17	83074609	83100122
METRNL_chr17_83074609_83100122	0/0	t0016	755	1	1	0	0	0	0	copy fasta	METRNL	chr17	83074609	83100122
METRNL_chr17_83074609_83100122	0/0	t0017	755	1	0	0	1	0	0	copy fasta	METRNL	chr17	83074609	83100122
METRNL_chr17_83074609_83100122	0/0	t0018	755	1	0	0	1	0	0	copy fasta	METRNL	chr17	83074609	83100122
METRNL_chr17_83074609_83100122	0/0	t0019	755	1	0	0	1	0	0	copy fasta	METRNL	chr17	83074609	83100122
METRNL_chr17_83074609_83100122	0/0	t0020	755	1	0	0	1	0	0	copy fasta	METRNL	chr17	83074609	83100122
METRNL_chr17_83074609_83100122	0/0	t0021	767	1	0	0	0	0	1	copy fasta	METRNL	chr17	83074609	83100122
METRNL_chr17_83074609_83100122	0/0	t0022	755	1	0	0	1	0	0	copy fasta	METRNL	chr17	83074609	83100122
METRNL_chr17_83074609_83100122	0/0	t0023	756	1	0	0	1	0	0	copy fasta	METRNL	chr17	83074609	83100122
METRNL_chr17_83074609_83100122	0/0	t0024	755	1	0	0	0	0	1	copy fasta	METRNL	chr17	83074609	83100122
METRN_chr16_710118_724655	1/1	t0001	2441	159	21	39	77	7	13	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	t0002	2442	129	8	28	68	3	22	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	t0003	2440	13	12	1	0	0	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	t0004	2440	11	8	2	0	0	1	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	t0005	2459	9	9	0	0	0	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	t0006	2441	9	8	1	0	0	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	t0007	2439	6	0	0	5	0	1	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	t0008	2463	5	1	2	0	0	2	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	t0009	2463	5	0	0	4	0	1	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	t0010	2442	5	4	1	0	0	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	t0011	2441	5	5	0	0	0	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	t0012	2441	4	4	0	0	0	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	t0013	2441	2	0	0	1	1	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	t0014	2442	2	0	1	1	0	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	t0015	2442	2	2	0	0	0	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	t0016	2442	2	0	0	0	0	2	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	t0017	2441	2	2	0	0	0	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	t0018	2442	2	2	0	0	0	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	t0019	2441	2	0	1	0	1	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	t0020	2463	1	1	0	0	0	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	t0021	2441	1	0	0	0	0	1	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	t0022	2441	1	0	0	1	0	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	t0023	2441	1	0	0	1	0	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	t0024	2441	1	0	0	1	0	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	t0025	2441	1	1	0	0	0	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	t0026	2441	1	1	0	0	0	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	t0027	2441	1	0	1	0	0	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	t0028	2441	1	0	0	1	0	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	t0029	2441	1	0	0	0	0	1	copy fasta	METRN	chr16	710118	724655