JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
METRN_chr16_710118_724655	0/0	t0030	2441	1	0	0	1	0	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	t0031	2441	1	0	0	1	0	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	t0032	2441	1	0	0	1	0	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	t0033	2442	1	1	0	0	0	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	t0034	2439	1	0	0	1	0	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	t0035	2442	1	0	0	1	0	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	t0036	2442	1	0	0	1	0	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	t0037	2442	1	0	0	0	0	1	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	t0038	2442	1	0	0	1	0	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	t0039	2442	1	1	0	0	0	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	t0040	2442	1	0	0	1	0	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	t0041	2442	1	1	0	0	0	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	t0042	2443	1	1	0	0	0	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	t0043	2442	1	0	1	0	0	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	t0044	2442	1	0	0	0	0	1	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	t0045	2442	1	1	0	0	0	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	t0046	2440	1	1	0	0	0	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	t0047	2441	1	1	0	0	0	0	copy fasta	METRN	chr16	710118	724655
METTL13_chr1_171776660_171802716	0/0	t0001	1269	133	24	21	71	3	14	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	1/1	t0002	1269	121	24	23	61	4	7	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	t0003	1269	39	1	14	6	4	14	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	t0004	1269	39	1	9	24	3	2	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	t0005	1269	15	15	0	0	0	0	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	t0006	1268	7	6	1	0	0	0	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	t0007	1269	5	4	0	1	0	0	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	t0008	1269	3	0	0	0	0	3	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	t0009	1269	3	3	0	0	0	0	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	t0010	1269	3	2	1	0	0	0	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	t0011	1269	2	2	0	0	0	0	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	t0012	1269	1	1	0	0	0	0	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	t0013	1269	1	1	0	0	0	0	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	t0014	1268	1	0	1	0	0	0	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	t0015	1269	1	0	0	1	0	0	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	t0016	1269	1	1	0	0	0	0	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	t0017	1269	1	1	0	0	0	0	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	t0018	1269	1	1	0	0	0	0	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	t0019	1269	1	1	0	0	0	0	copy fasta	METTL13	chr1	171776660	171802716
METTL14_chr4_118680392_118720430	0/0	t0001	5272	125	36	19	54	6	10	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	0/1	t0002	5272	87	2	15	52	5	12	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	0/0	t0003	5271	63	7	14	28	5	9	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	0/0	t0004	5272	23	0	6	17	0	0	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	0/0	t0005	5272	12	12	0	0	0	0	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	1/0	t0006	5272	11	8	2	0	0	0	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	0/0	t0007	5271	5	5	0	0	0	0	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	0/0	t0008	5272	5	0	0	5	0	0	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	0/0	t0009	5273	4	0	1	2	0	1	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	0/0	t0010	5271	4	2	1	1	0	0	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	0/0	t0011	5281	4	4	0	0	0	0	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	0/0	t0012	5272	4	0	2	2	0	0	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	0/0	t0013	5272	4	0	0	4	0	0	copy fasta	METTL14	chr4	118680392	118720430