JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
METTL14_chr4_118680392_118720430	0/0	t0014	5271	3	0	3	0	0	0	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	0/0	t0015	5269	2	1	0	1	0	0	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	0/0	t0016	5271	2	0	1	1	0	0	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	0/0	t0017	5273	2	1	1	0	0	0	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	0/0	t0018	5271	2	1	1	0	0	0	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	0/0	t0019	5273	2	2	0	0	0	0	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	0/0	t0020	5272	2	0	0	2	0	0	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	0/0	t0021	5269	2	2	0	0	0	0	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	0/0	t0022	5282	2	2	0	0	0	0	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	0/0	t0023	5270	2	0	0	2	0	0	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	0/0	t0024	5272	1	0	0	1	0	0	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	0/0	t0025	5272	1	0	0	0	0	1	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	0/0	t0026	5272	1	1	0	0	0	0	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	0/0	t0027	5272	1	0	0	1	0	0	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	0/0	t0028	5272	1	0	0	1	0	0	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	0/0	t0029	5272	1	0	0	0	0	1	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	0/0	t0030	5272	1	1	0	0	0	0	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	0/0	t0031	5272	1	1	0	0	0	0	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	0/0	t0032	5299	1	1	0	0	0	0	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	0/0	t0033	5271	1	0	1	0	0	0	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	0/0	t0034	5272	1	0	0	1	0	0	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	0/0	t0035	5272	1	1	0	0	0	0	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	0/0	t0036	5272	1	0	1	0	0	0	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	0/0	t0037	5272	1	1	0	0	0	0	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	0/0	t0038	5272	1	1	0	0	0	0	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	0/0	t0039	5282	1	1	0	0	0	0	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	0/0	t0040	5272	1	0	0	1	0	0	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	0/0	t0041	5271	1	0	0	1	0	0	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	0/0	t0042	5271	1	1	0	0	0	0	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	0/0	t0043	5271	1	0	0	1	0	0	copy fasta	METTL14	chr4	118680392	118720430
METTL15_chr11_28103388_28338507	0/0	t0001	2985	87	15	18	37	1	16	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	0/1	t0002	2986	72	7	11	46	2	5	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	0/0	t0003	2990	58	2	1	47	0	8	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	0/0	t0004	2993	36	16	5	10	1	4	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	0/0	t0005	2991	12	2	0	9	0	1	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	0/0	t0006	2992	12	9	0	3	0	0	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	0/0	t0007	2994	10	2	1	6	0	1	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	0/0	t0008	2993	7	6	1	0	0	0	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	0/0	t0009	2995	6	4	0	2	0	0	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	0/0	t0010	2985	5	2	0	3	0	0	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	0/0	t0011	2985	4	4	0	0	0	0	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	0/0	t0012	2990	3	3	0	0	0	0	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	0/0	t0013	2992	2	0	0	2	0	0	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	0/0	t0014	2991	2	2	0	0	0	0	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	0/0	t0015	2985	2	0	0	2	0	0	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	0/0	t0016	2991	1	0	1	0	0	0	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	0/0	t0017	2992	1	1	0	0	0	0	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	0/0	t0018	2989	1	0	0	1	0	0	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	0/0	t0019	2993	1	1	0	0	0	0	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	0/0	t0020	2994	1	1	0	0	0	0	copy fasta	METTL15	chr11	28103388	28338507