JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
METTL15_chr11_28103388_28338507	0/0	t0021	2985	1	1	0	0	0	0	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	0/0	t0022	2993	1	1	0	0	0	0	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	0/0	t0023	2991	1	1	0	0	0	0	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	0/0	t0024	2993	1	0	0	1	0	0	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	0/0	t0025	2992	1	1	0	0	0	0	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	1/0	t0026	2985	1	0	0	0	0	0	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	0/0	t0027	2985	1	0	0	1	0	0	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	0/0	t0028	2985	1	1	0	0	0	0	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	0/0	t0029	2986	1	0	0	0	0	1	copy fasta	METTL15	chr11	28103388	28338507
METTL16_chr17_2411049_2516888	0/0	t0001	4058	26	3	12	8	0	3	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/1	t0002	4057	22	0	1	14	4	2	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0003	4069	20	0	10	2	4	4	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	1/0	t0004	4052	19	1	7	2	2	6	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0005	4059	18	1	1	9	3	4	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0006	4068	15	4	3	7	0	1	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0007	4060	12	6	0	4	0	2	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0008	4061	10	5	2	2	1	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0009	4069	8	1	2	3	0	2	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0010	4068	7	0	3	4	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0011	4056	7	3	1	2	1	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0012	4050	7	7	0	0	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0013	4058	6	0	3	2	1	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0014	4050	6	0	6	0	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0015	4057	6	3	1	2	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0016	4070	5	0	2	2	0	1	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0017	4048	5	2	0	2	0	1	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0018	4047	5	5	0	0	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0019	4071	3	0	0	3	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0020	4053	3	1	1	0	0	1	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0021	4051	3	1	1	1	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0022	4047	3	3	0	0	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0023	4064	3	1	1	1	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0024	4049	3	2	1	0	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0025	4048	2	2	0	0	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0026	4068	2	0	0	2	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0027	4074	2	0	0	1	0	1	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0028	4056	2	0	0	1	0	1	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0029	4070	2	2	0	0	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0030	4062	2	2	0	0	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0031	4050	2	2	0	0	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0032	4069	2	0	0	0	0	2	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0033	4058	2	2	0	0	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0034	4051	1	1	0	0	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0035	4050	1	1	0	0	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0036	4068	1	1	0	0	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0037	4069	1	0	0	1	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0038	4085	1	0	0	1	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0039	4083	1	0	1	0	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0040	4082	1	0	0	1	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0041	4081	1	0	0	1	0	0	copy fasta	METTL16	chr17	2411049	2516888