JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
METTL16_chr17_2411049_2516888	0/0	t0042	4080	1	1	0	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0043	4079	1	0	1	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0044	4076	1	0	0	1	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0045	4073	1	0	0	1	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0046	4072	1	0	0	1	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0047	4071	1	0	1	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0048	4071	1	0	0	1	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0049	4070	1	0	0	1	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0050	4069	1	1	0	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0051	4068	1	0	0	1	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0052	4067	1	0	0	1	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0053	4066	1	0	0	1	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0054	4058	1	0	1	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0055	4056	1	0	1	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0056	4056	1	0	0	0	1	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0057	4073	1	0	0	0	1	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0058	4050	1	0	1	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0059	4080	1	1	0	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0060	4073	1	0	0	1	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0061	4072	1	0	1	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0062	4058	1	0	1	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0063	4052	1	0	0	1	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0064	4057	1	0	0	1	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0065	4069	1	0	0	1	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0066	4060	1	1	0	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0067	4058	1	1	0	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0068	4048	1	1	0	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0069	4058	1	1	0	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0070	4069	1	1	0	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0071	4078	1	0	1	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0072	4069	1	1	0	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0073	4063	1	1	0	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0074	4051	1	1	0	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0075	4050	1	1	0	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0076	4059	1	1	0	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0077	4058	1	1	0	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0078	4058	1	0	0	0	1	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0079	4048	1	1	0	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0080	4030	1	1	0	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0081	4049	1	1	0	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0082	4048	1	0	1	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0083	4051	1	1	0	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0084	4056	1	0	0	0	1	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0085	4063	1	1	0	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0086	4048	1	1	0	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0087	4051	1	1	0	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0088	4063	1	0	0	0	1	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0089	4061	1	1	0	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0090	4058	1	1	0	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	t0091	4057	1	1	0	0	0	copy fasta	METTL16	chr17	2411049	2516888