Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARHGAP24_chr4_85470150_86007666	0/0	t0019	2373	1	1	0	0	0	0	copy fasta	ARHGAP24	chr4	85470150	86007666
ARHGAP24_chr4_85470150_86007666	0/0	t0020	2375	1	0	1	0	0	0	copy fasta	ARHGAP24	chr4	85470150	86007666
ARHGAP24_chr4_85470150_86007666	0/0	t0021	2375	1	0	1	0	0	0	copy fasta	ARHGAP24	chr4	85470150	86007666
ARHGAP25_chr2_68729811_68831833	0/0	t0001	1029	175	34	27	95	6	13	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	1/1	t0002	1029	69	18	15	16	6	12	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	t0003	1029	42	14	7	14	1	6	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	t0004	1029	14	5	2	3	2	2	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	t0005	1029	10	3	1	4	2	0	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	t0006	1029	8	0	2	4	0	2	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	t0007	1029	7	4	3	0	0	0	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	t0008	1030	6	5	1	0	0	0	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	t0009	1029	5	0	4	1	0	0	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	t0010	1029	5	1	1	0	0	3	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	t0011	1029	4	0	2	1	0	1	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	t0012	1030	4	4	0	0	0	0	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	t0013	1030	3	2	1	0	0	0	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	t0014	1029	3	0	1	2	0	0	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	t0015	1029	3	0	2	1	0	0	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	t0016	1029	2	2	0	0	0	0	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	t0017	1030	2	2	0	0	0	0	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	t0018	1029	1	0	0	0	1	0	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	t0019	1029	1	0	0	0	0	1	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	t0020	1029	1	1	0	0	0	0	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	t0021	1030	1	0	0	1	0	0	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	t0022	1030	1	1	0	0	0	0	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	t0023	1029	1	0	1	0	0	0	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP26_chr5_142765377_143234007	0/0	t0001	6943	35	2	1	26	0	6	copy fasta	ARHGAP26	chr5	142765377	143234007
ARHGAP26_chr5_142765377_143234007	0/0	t0002	6942	34	11	1	19	0	3	copy fasta	ARHGAP26	chr5	142765377	143234007
ARHGAP26_chr5_142765377_143234007	1/0	t0003	6947	28	3	6	12	0	6	copy fasta	ARHGAP26	chr5	142765377	143234007
ARHGAP26_chr5_142765377_143234007	0/0	t0004	6942	14	9	1	4	0	0	copy fasta	ARHGAP26	chr5	142765377	143234007
ARHGAP26_chr5_142765377_143234007	0/0	t0005	6943	10	1	2	7	0	0	copy fasta	ARHGAP26	chr5	142765377	143234007
ARHGAP26_chr5_142765377_143234007	0/0	t0006	6944	7	6	1	0	0	0	copy fasta	ARHGAP26	chr5	142765377	143234007
ARHGAP26_chr5_142765377_143234007	0/0	t0007	6947	5	0	0	4	0	1	copy fasta	ARHGAP26	chr5	142765377	143234007
ARHGAP26_chr5_142765377_143234007	0/0	t0008	6942	3	0	0	3	0	0	copy fasta	ARHGAP26	chr5	142765377	143234007
ARHGAP26_chr5_142765377_143234007	0/0	t0009	6946	3	2	1	0	0	0	copy fasta	ARHGAP26	chr5	142765377	143234007
ARHGAP26_chr5_142765377_143234007	0/0	t0010	6938	3	1	0	2	0	0	copy fasta	ARHGAP26	chr5	142765377	143234007
ARHGAP26_chr5_142765377_143234007	0/0	t0011	6946	2	2	0	0	0	0	copy fasta	ARHGAP26	chr5	142765377	143234007
ARHGAP26_chr5_142765377_143234007	0/0	t0012	6947	2	2	0	0	0	0	copy fasta	ARHGAP26	chr5	142765377	143234007
ARHGAP26_chr5_142765377_143234007	0/0	t0013	6943	2	2	0	0	0	0	copy fasta	ARHGAP26	chr5	142765377	143234007
ARHGAP26_chr5_142765377_143234007	0/0	t0014	6942	2	2	0	0	0	0	copy fasta	ARHGAP26	chr5	142765377	143234007
ARHGAP26_chr5_142765377_143234007	0/0	t0015	6941	2	2	0	0	0	0	copy fasta	ARHGAP26	chr5	142765377	143234007
ARHGAP26_chr5_142765377_143234007	0/0	t0016	6943	2	2	0	0	0	0	copy fasta	ARHGAP26	chr5	142765377	143234007
ARHGAP26_chr5_142765377_143234007	0/1	t0017	6946	2	0	0	0	0	1	copy fasta	ARHGAP26	chr5	142765377	143234007
ARHGAP26_chr5_142765377_143234007	0/0	t0018	6947	2	1	0	1	0	0	copy fasta	ARHGAP26	chr5	142765377	143234007
ARHGAP26_chr5_142765377_143234007	0/0	t0019	6947	2	0	2	0	0	0	copy fasta	ARHGAP26	chr5	142765377	143234007
ARHGAP26_chr5_142765377_143234007	0/0	t0020	6943	2	2	0	0	0	0	copy fasta	ARHGAP26	chr5	142765377	143234007
ARHGAP26_chr5_142765377_143234007	0/0	t0021	6939	2	0	1	1	0	0	copy fasta	ARHGAP26	chr5	142765377	143234007
ARHGAP26_chr5_142765377_143234007	0/0	t0022	6940	2	2	0	0	0	0	copy fasta	ARHGAP26	chr5	142765377	143234007
ARHGAP26_chr5_142765377_143234007	0/0	t0023	6942	1	1	0	0	0	0	copy fasta	ARHGAP26	chr5	142765377	143234007
ARHGAP26_chr5_142765377_143234007	0/0	t0024	6943	1	1	0	0	0	0	copy fasta	ARHGAP26	chr5	142765377	143234007