JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
METTL21C_chr13_102680747_102700044	0/0	t0078	2921	1	1	0	0	0	0	copy fasta	METTL21C	chr13	102680747	102700044
METTL21C_chr13_102680747_102700044	0/0	t0079	2921	1	0	0	0	0	1	copy fasta	METTL21C	chr13	102680747	102700044
METTL21C_chr13_102680747_102700044	0/0	t0080	2921	1	0	1	0	0	0	copy fasta	METTL21C	chr13	102680747	102700044
METTL21C_chr13_102680747_102700044	0/0	t0081	831	1	0	0	1	0	0	copy fasta	METTL21C	chr13	102680747	102700044
METTL21C_chr13_102680747_102700044	0/0	t0082	2923	1	0	0	1	0	0	copy fasta	METTL21C	chr13	102680747	102700044
METTL21C_chr13_102680747_102700044	0/0	t0083	2927	1	1	0	0	0	0	copy fasta	METTL21C	chr13	102680747	102700044
METTL21C_chr13_102680747_102700044	0/0	t0084	2933	1	0	1	0	0	0	copy fasta	METTL21C	chr13	102680747	102700044
METTL21C_chr13_102680747_102700044	0/0	t0085	2917	1	1	0	0	0	0	copy fasta	METTL21C	chr13	102680747	102700044
METTL21C_chr13_102680747_102700044	0/0	t0086	2919	1	0	1	0	0	0	copy fasta	METTL21C	chr13	102680747	102700044
METTL21C_chr13_102680747_102700044	0/0	t0087	2919	1	0	0	0	0	1	copy fasta	METTL21C	chr13	102680747	102700044
METTL21C_chr13_102680747_102700044	0/0	t0088	2921	1	1	0	0	0	0	copy fasta	METTL21C	chr13	102680747	102700044
METTL21C_chr13_102680747_102700044	0/0	t0089	831	1	0	0	0	1	0	copy fasta	METTL21C	chr13	102680747	102700044
METTL21C_chr13_102680747_102700044	0/0	t0090	2923	1	0	0	0	1	0	copy fasta	METTL21C	chr13	102680747	102700044
METTL21C_chr13_102680747_102700044	0/0	t0091	2927	1	0	0	0	1	0	copy fasta	METTL21C	chr13	102680747	102700044
METTL21C_chr13_102680747_102700044	0/0	t0092	2919	1	0	0	1	0	0	copy fasta	METTL21C	chr13	102680747	102700044
METTL21C_chr13_102680747_102700044	0/0	t0093	2921	1	1	0	0	0	0	copy fasta	METTL21C	chr13	102680747	102700044
METTL21C_chr13_102680747_102700044	0/0	t0094	2921	1	0	0	1	0	0	copy fasta	METTL21C	chr13	102680747	102700044
METTL21C_chr13_102680747_102700044	0/0	t0095	2921	1	0	0	1	0	0	copy fasta	METTL21C	chr13	102680747	102700044
METTL21C_chr13_102680747_102700044	0/0	t0096	2923	1	0	0	1	0	0	copy fasta	METTL21C	chr13	102680747	102700044
METTL21C_chr13_102680747_102700044	0/0	t0097	2923	1	0	0	1	0	0	copy fasta	METTL21C	chr13	102680747	102700044
METTL21C_chr13_102680747_102700044	0/0	t0098	833	1	0	0	1	0	0	copy fasta	METTL21C	chr13	102680747	102700044
METTL21C_chr13_102680747_102700044	0/0	t0099	2921	1	1	0	0	0	0	copy fasta	METTL21C	chr13	102680747	102700044
METTL21C_chr13_102680747_102700044	0/0	t0100	2923	1	0	0	0	0	1	copy fasta	METTL21C	chr13	102680747	102700044
METTL21C_chr13_102680747_102700044	0/0	t0101	2923	1	0	0	1	0	0	copy fasta	METTL21C	chr13	102680747	102700044
METTL21C_chr13_102680747_102700044	0/0	t0102	833	1	0	0	1	0	0	copy fasta	METTL21C	chr13	102680747	102700044
METTL21C_chr13_102680747_102700044	0/0	t0103	2919	1	0	0	0	0	1	copy fasta	METTL21C	chr13	102680747	102700044
METTL21C_chr13_102680747_102700044	0/0	t0104	2921	1	0	0	0	0	1	copy fasta	METTL21C	chr13	102680747	102700044
METTL21C_chr13_102680747_102700044	0/0	t0105	2921	1	1	0	0	0	0	copy fasta	METTL21C	chr13	102680747	102700044
METTL21C_chr13_102680747_102700044	0/0	t0106	2921	1	0	0	0	0	1	copy fasta	METTL21C	chr13	102680747	102700044
METTL21C_chr13_102680747_102700044	0/0	t0107	2921	1	1	0	0	0	0	copy fasta	METTL21C	chr13	102680747	102700044
METTL21C_chr13_102680747_102700044	0/0	t0108	2921	1	1	0	0	0	0	copy fasta	METTL21C	chr13	102680747	102700044
METTL21C_chr13_102680747_102700044	0/0	t0109	2925	1	0	0	1	0	0	copy fasta	METTL21C	chr13	102680747	102700044
METTL22_chr16_8616698_8654654	0/0	t0001	3759	194	22	38	99	7	28	copy fasta	METTL22	chr16	8616698	8654654
METTL22_chr16_8616698_8654654	0/0	t0002	3759	53	6	15	25	1	6	copy fasta	METTL22	chr16	8616698	8654654
METTL22_chr16_8616698_8654654	0/1	t0003	3759	12	5	2	0	2	2	copy fasta	METTL22	chr16	8616698	8654654
METTL22_chr16_8616698_8654654	0/0	t0004	3759	11	0	3	0	3	5	copy fasta	METTL22	chr16	8616698	8654654
METTL22_chr16_8616698_8654654	0/0	t0005	3759	10	10	0	0	0	0	copy fasta	METTL22	chr16	8616698	8654654
METTL22_chr16_8616698_8654654	1/0	t0006	3760	9	8	0	0	0	0	copy fasta	METTL22	chr16	8616698	8654654
METTL22_chr16_8616698_8654654	0/0	t0007	3759	8	2	3	0	1	2	copy fasta	METTL22	chr16	8616698	8654654
METTL22_chr16_8616698_8654654	0/0	t0008	3759	8	0	0	8	0	0	copy fasta	METTL22	chr16	8616698	8654654
METTL22_chr16_8616698_8654654	0/0	t0009	3759	6	6	0	0	0	0	copy fasta	METTL22	chr16	8616698	8654654
METTL22_chr16_8616698_8654654	0/0	t0010	3756	6	5	1	0	0	0	copy fasta	METTL22	chr16	8616698	8654654
METTL22_chr16_8616698_8654654	0/0	t0011	3759	5	5	0	0	0	0	copy fasta	METTL22	chr16	8616698	8654654
METTL22_chr16_8616698_8654654	0/0	t0012	3759	4	0	0	4	0	0	copy fasta	METTL22	chr16	8616698	8654654
METTL22_chr16_8616698_8654654	0/0	t0013	3759	4	0	3	0	0	1	copy fasta	METTL22	chr16	8616698	8654654
METTL22_chr16_8616698_8654654	0/0	t0014	3759	3	0	2	0	0	1	copy fasta	METTL22	chr16	8616698	8654654
METTL22_chr16_8616698_8654654	0/0	t0015	3759	3	0	0	3	0	0	copy fasta	METTL22	chr16	8616698	8654654
METTL22_chr16_8616698_8654654	0/0	t0016	3759	3	0	0	2	0	1	copy fasta	METTL22	chr16	8616698	8654654
METTL22_chr16_8616698_8654654	0/0	t0017	3759	3	3	0	0	0	0	copy fasta	METTL22	chr16	8616698	8654654
METTL22_chr16_8616698_8654654	0/0	t0018	3759	3	0	3	0	0	0	copy fasta	METTL22	chr16	8616698	8654654