JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
METTL24_chr6_110238940_110363349	0/0	t0005	2096	13	13	0	0	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	t0006	2100	11	1	1	8	0	1	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	t0007	2092	9	0	0	9	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	t0008	2096	8	0	2	3	0	3	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	t0009	2096	7	6	1	0	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	t0010	2104	6	0	1	4	0	1	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	t0011	2088	6	0	5	0	1	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	t0012	2092	5	2	0	2	0	1	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	t0013	2088	4	0	0	3	0	1	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	t0014	2092	4	4	0	0	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	t0015	2088	4	0	2	1	0	1	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	t0016	2100	4	4	0	0	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	t0017	2096	3	0	0	3	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	t0018	2096	3	2	1	0	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	t0019	2100	3	3	0	0	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	t0020	2096	2	0	2	0	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	t0021	2088	2	2	0	0	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	t0022	2096	2	0	0	2	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	t0023	2100	2	2	0	0	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	t0024	2092	2	1	1	0	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	t0025	2096	2	0	1	0	1	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	t0026	2096	1	1	0	0	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	t0027	2100	1	1	0	0	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	t0028	2100	1	0	1	0	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	t0029	2084	1	0	0	1	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	t0030	2092	1	1	0	0	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	t0031	2100	1	1	0	0	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	t0032	2084	1	1	0	0	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	t0033	2088	1	1	0	0	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	t0034	2096	1	1	0	0	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	t0035	2096	1	1	0	0	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	t0036	2104	1	1	0	0	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	t0037	2084	1	1	0	0	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	t0038	2067	1	0	0	1	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	t0039	2084	1	0	1	0	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	t0040	2088	1	1	0	0	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	t0041	2092	1	1	0	0	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL25B_chr1_156723469_156741960	0/0	t0001	844	132	53	35	26	1	17	copy fasta	METTL25B	chr1	156723469	156741960
METTL25B_chr1_156723469_156741960	0/1	t0002	844	112	12	12	66	9	12	copy fasta	METTL25B	chr1	156723469	156741960
METTL25B_chr1_156723469_156741960	0/0	t0003	844	75	8	18	31	3	15	copy fasta	METTL25B	chr1	156723469	156741960
METTL25B_chr1_156723469_156741960	0/0	t0004	844	52	9	19	15	3	6	copy fasta	METTL25B	chr1	156723469	156741960
METTL25B_chr1_156723469_156741960	1/0	t0005	844	8	7	0	0	0	0	copy fasta	METTL25B	chr1	156723469	156741960
METTL25B_chr1_156723469_156741960	0/0	t0006	844	4	0	0	4	0	0	copy fasta	METTL25B	chr1	156723469	156741960
METTL25B_chr1_156723469_156741960	0/0	t0007	840	3	3	0	0	0	0	copy fasta	METTL25B	chr1	156723469	156741960
METTL25B_chr1_156723469_156741960	0/0	t0008	844	1	1	0	0	0	0	copy fasta	METTL25B	chr1	156723469	156741960
METTL25B_chr1_156723469_156741960	0/0	t0009	844	1	1	0	0	0	0	copy fasta	METTL25B	chr1	156723469	156741960
METTL25B_chr1_156723469_156741960	0/0	t0010	844	1	1	0	0	0	0	copy fasta	METTL25B	chr1	156723469	156741960
METTL25B_chr1_156723469_156741960	0/0	t0011	844	1	1	0	0	0	0	copy fasta	METTL25B	chr1	156723469	156741960
METTL25_chr12_82353529_82484239	1/1	t0001	253	101	43	19	14	8	15	copy fasta	METTL25	chr12	82353529	82484239
METTL25_chr12_82353529_82484239	0/0	t0002	253	27	22	3	0	2	0	copy fasta	METTL25	chr12	82353529	82484239