JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
METTL25_chr12_82353529_82484239	0/0	t0003	253	1	0	0	0	0	1	copy fasta	METTL25	chr12	82353529	82484239
METTL25_chr12_82353529_82484239	0/0	t0004	253	1	1	0	0	0	0	copy fasta	METTL25	chr12	82353529	82484239
METTL26_chr16_629430_641305	1/1	t0001	183	400	94	81	162	14	47	copy fasta	METTL26	chr16	629430	641305
METTL26_chr16_629430_641305	0/0	t0002	183	3	1	1	0	0	1	copy fasta	METTL26	chr16	629430	641305
METTL26_chr16_629430_641305	0/0	t0003	183	1	1	0	0	0	0	copy fasta	METTL26	chr16	629430	641305
METTL27_chr7_73829590_73847516	0/1	t0001	185	186	42	48	72	5	18	copy fasta	METTL27	chr7	73829590	73847516
METTL27_chr7_73829590_73847516	1/0	t0002	185	180	54	32	66	7	20	copy fasta	METTL27	chr7	73829590	73847516
METTL27_chr7_73829590_73847516	0/0	t0003	185	5	0	0	5	0	0	copy fasta	METTL27	chr7	73829590	73847516
METTL27_chr7_73829590_73847516	0/0	t0004	195	1	0	0	1	0	0	copy fasta	METTL27	chr7	73829590	73847516
METTL2A_chr17_62418897_62458385	0/0	t0001	4661	55	4	17	24	3	7	copy fasta	METTL2A	chr17	62418897	62458385
METTL2A_chr17_62418897_62458385	0/1	t0002	4661	31	2	8	10	4	6	copy fasta	METTL2A	chr17	62418897	62458385
METTL2A_chr17_62418897_62458385	0/0	t0003	4671	26	8	4	13	0	1	copy fasta	METTL2A	chr17	62418897	62458385
METTL2A_chr17_62418897_62458385	0/0	t0004	4670	24	4	4	16	0	0	copy fasta	METTL2A	chr17	62418897	62458385
METTL2A_chr17_62418897_62458385	0/0	t0005	4662	19	0	3	14	0	2	copy fasta	METTL2A	chr17	62418897	62458385
METTL2A_chr17_62418897_62458385	0/0	t0006	4660	17	1	5	10	0	1	copy fasta	METTL2A	chr17	62418897	62458385
METTL2A_chr17_62418897_62458385	0/0	t0007	4663	17	15	2	0	0	0	copy fasta	METTL2A	chr17	62418897	62458385
METTL2A_chr17_62418897_62458385	0/0	t0008	4662	10	0	1	6	0	3	copy fasta	METTL2A	chr17	62418897	62458385
METTL2A_chr17_62418897_62458385	0/0	t0009	4653	7	0	0	7	0	0	copy fasta	METTL2A	chr17	62418897	62458385
METTL2A_chr17_62418897_62458385	0/0	t0010	4662	7	2	1	3	0	1	copy fasta	METTL2A	chr17	62418897	62458385
METTL2A_chr17_62418897_62458385	0/0	t0011	4663	7	0	0	7	0	0	copy fasta	METTL2A	chr17	62418897	62458385
METTL2A_chr17_62418897_62458385	0/0	t0012	4663	7	0	3	3	0	1	copy fasta	METTL2A	chr17	62418897	62458385
METTL2A_chr17_62418897_62458385	0/0	t0013	4657	6	5	1	0	0	0	copy fasta	METTL2A	chr17	62418897	62458385
METTL2A_chr17_62418897_62458385	0/0	t0014	4660	5	0	0	5	0	0	copy fasta	METTL2A	chr17	62418897	62458385
METTL2A_chr17_62418897_62458385	0/0	t0015	4672	5	2	1	2	0	0	copy fasta	METTL2A	chr17	62418897	62458385
METTL2A_chr17_62418897_62458385	0/0	t0016	4663	5	0	0	5	0	0	copy fasta	METTL2A	chr17	62418897	62458385
METTL2A_chr17_62418897_62458385	0/0	t0017	4669	4	1	1	2	0	0	copy fasta	METTL2A	chr17	62418897	62458385
METTL2A_chr17_62418897_62458385	0/0	t0018	4664	4	4	0	0	0	0	copy fasta	METTL2A	chr17	62418897	62458385
METTL2A_chr17_62418897_62458385	0/0	t0019	4663	4	0	1	3	0	0	copy fasta	METTL2A	chr17	62418897	62458385
METTL2A_chr17_62418897_62458385	0/0	t0020	4664	4	0	3	1	0	0	copy fasta	METTL2A	chr17	62418897	62458385
METTL2A_chr17_62418897_62458385	0/0	t0021	4660	4	3	1	0	0	0	copy fasta	METTL2A	chr17	62418897	62458385
METTL2A_chr17_62418897_62458385	0/0	t0022	4673	3	1	0	2	0	0	copy fasta	METTL2A	chr17	62418897	62458385
METTL2A_chr17_62418897_62458385	0/0	t0023	4662	3	0	2	0	1	0	copy fasta	METTL2A	chr17	62418897	62458385
METTL2A_chr17_62418897_62458385	0/0	t0024	4661	3	0	0	3	0	0	copy fasta	METTL2A	chr17	62418897	62458385
METTL2A_chr17_62418897_62458385	0/0	t0025	4664	3	0	1	2	0	0	copy fasta	METTL2A	chr17	62418897	62458385
METTL2A_chr17_62418897_62458385	0/0	t0026	4661	3	0	2	0	0	1	copy fasta	METTL2A	chr17	62418897	62458385
METTL2A_chr17_62418897_62458385	0/0	t0027	4656	3	3	0	0	0	0	copy fasta	METTL2A	chr17	62418897	62458385
METTL2A_chr17_62418897_62458385	0/0	t0028	4659	2	2	0	0	0	0	copy fasta	METTL2A	chr17	62418897	62458385
METTL2A_chr17_62418897_62458385	0/0	t0029	4677	2	0	2	0	0	0	copy fasta	METTL2A	chr17	62418897	62458385
METTL2A_chr17_62418897_62458385	0/0	t0030	4661	2	0	1	0	0	1	copy fasta	METTL2A	chr17	62418897	62458385
METTL2A_chr17_62418897_62458385	0/0	t0031	4661	2	2	0	0	0	0	copy fasta	METTL2A	chr17	62418897	62458385
METTL2A_chr17_62418897_62458385	0/0	t0032	4664	2	2	0	0	0	0	copy fasta	METTL2A	chr17	62418897	62458385
METTL2A_chr17_62418897_62458385	0/0	t0033	4665	2	2	0	0	0	0	copy fasta	METTL2A	chr17	62418897	62458385
METTL2A_chr17_62418897_62458385	0/0	t0034	4667	2	2	0	0	0	0	copy fasta	METTL2A	chr17	62418897	62458385
METTL2A_chr17_62418897_62458385	0/0	t0035	4669	2	0	0	2	0	0	copy fasta	METTL2A	chr17	62418897	62458385
METTL2A_chr17_62418897_62458385	0/0	t0036	4662	2	1	1	0	0	0	copy fasta	METTL2A	chr17	62418897	62458385
METTL2A_chr17_62418897_62458385	0/0	t0037	4665	2	2	0	0	0	0	copy fasta	METTL2A	chr17	62418897	62458385
METTL2A_chr17_62418897_62458385	0/0	t0038	4662	2	2	0	0	0	0	copy fasta	METTL2A	chr17	62418897	62458385
METTL2A_chr17_62418897_62458385	0/0	t0039	4662	1	0	1	0	0	0	copy fasta	METTL2A	chr17	62418897	62458385
METTL2A_chr17_62418897_62458385	0/0	t0040	4654	1	0	0	1	0	0	copy fasta	METTL2A	chr17	62418897	62458385
METTL2A_chr17_62418897_62458385	0/0	t0041	4660	1	1	0	0	0	0	copy fasta	METTL2A	chr17	62418897	62458385