JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
METTL2B_chr7_128471748_128511602	0/0	t0049	4707	1	1	0	0	0	0	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	0/0	t0050	4708	1	0	0	1	0	0	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	0/0	t0051	4707	1	0	0	1	0	0	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	0/0	t0052	4709	1	0	0	1	0	0	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	0/0	t0053	4705	1	0	1	0	0	0	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	0/0	t0054	4706	1	1	0	0	0	0	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	0/0	t0055	4706	1	1	0	0	0	0	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	0/0	t0056	4706	1	1	0	0	0	0	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	0/0	t0057	4726	1	0	1	0	0	0	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	0/0	t0058	4711	1	0	0	1	0	0	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	0/0	t0059	4710	1	0	0	1	0	0	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	0/0	t0060	4713	1	0	0	1	0	0	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	0/0	t0061	4711	1	0	1	0	0	0	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	0/0	t0062	4707	1	1	0	0	0	0	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	0/0	t0063	4707	1	0	0	0	0	1	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	0/0	t0064	4707	1	0	0	1	0	0	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	0/0	t0065	4707	1	0	0	0	1	0	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	0/0	t0066	4706	1	0	0	1	0	0	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	0/0	t0067	4708	1	0	0	0	1	0	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	0/0	t0068	4708	1	1	0	0	0	0	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	0/0	t0069	4712	1	1	0	0	0	0	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	0/0	t0070	4713	1	0	1	0	0	0	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	0/0	t0071	4713	1	1	0	0	0	0	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	0/0	t0072	4715	1	0	0	1	0	0	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	0/0	t0073	4707	1	1	0	0	0	0	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	0/0	t0074	4712	1	0	1	0	0	0	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	0/0	t0075	4709	1	0	0	1	0	0	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	0/0	t0076	4713	1	0	0	1	0	0	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	0/0	t0077	4703	1	1	0	0	0	0	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	0/0	t0078	4711	1	0	0	1	0	0	copy fasta	METTL2B	chr7	128471748	128511602
METTL3_chr14_21493138_21516340	1/1	t0001	238	424	99	72	191	16	44	copy fasta	METTL3	chr14	21493138	21516340
METTL3_chr14_21493138_21516340	0/0	t0002	238	1	0	0	1	0	0	copy fasta	METTL3	chr14	21493138	21516340
METTL3_chr14_21493138_21516340	0/0	t0003	238	1	1	0	0	0	0	copy fasta	METTL3	chr14	21493138	21516340
METTL4_chr18_2532530_2576505	0/0	t0001	2266	155	1	31	103	6	14	copy fasta	METTL4	chr18	2532530	2576505
METTL4_chr18_2532530_2576505	0/0	t0002	2266	62	28	9	18	3	4	copy fasta	METTL4	chr18	2532530	2576505
METTL4_chr18_2532530_2576505	0/1	t0003	2266	52	8	7	22	2	12	copy fasta	METTL4	chr18	2532530	2576505
METTL4_chr18_2532530_2576505	0/0	t0004	2266	24	1	2	21	0	0	copy fasta	METTL4	chr18	2532530	2576505
METTL4_chr18_2532530_2576505	0/0	t0005	2265	21	3	0	14	0	4	copy fasta	METTL4	chr18	2532530	2576505
METTL4_chr18_2532530_2576505	0/0	t0006	2266	16	7	6	0	2	1	copy fasta	METTL4	chr18	2532530	2576505
METTL4_chr18_2532530_2576505	0/0	t0007	2266	13	5	4	0	3	1	copy fasta	METTL4	chr18	2532530	2576505
METTL4_chr18_2532530_2576505	1/0	t0008	2266	13	9	3	0	0	0	copy fasta	METTL4	chr18	2532530	2576505
METTL4_chr18_2532530_2576505	0/0	t0009	2266	12	8	4	0	0	0	copy fasta	METTL4	chr18	2532530	2576505
METTL4_chr18_2532530_2576505	0/0	t0010	2266	5	5	0	0	0	0	copy fasta	METTL4	chr18	2532530	2576505
METTL4_chr18_2532530_2576505	0/0	t0011	2266	4	4	0	0	0	0	copy fasta	METTL4	chr18	2532530	2576505
METTL4_chr18_2532530_2576505	0/0	t0012	2266	4	0	0	1	2	1	copy fasta	METTL4	chr18	2532530	2576505
METTL4_chr18_2532530_2576505	0/0	t0013	2266	4	4	0	0	0	0	copy fasta	METTL4	chr18	2532530	2576505
METTL4_chr18_2532530_2576505	0/0	t0014	2265	3	3	0	0	0	0	copy fasta	METTL4	chr18	2532530	2576505
METTL4_chr18_2532530_2576505	0/0	t0015	2266	2	0	0	2	0	0	copy fasta	METTL4	chr18	2532530	2576505
METTL4_chr18_2532530_2576505	0/0	t0016	2266	2	2	0	0	0	0	copy fasta	METTL4	chr18	2532530	2576505
METTL4_chr18_2532530_2576505	0/0	t0017	2266	1	0	0	0	0	1	copy fasta	METTL4	chr18	2532530	2576505