JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
METTL4_chr18_2532530_2576505	0/0	t0018	2266	1	1	0	0	0	0	copy fasta	METTL4	chr18	2532530	2576505
METTL4_chr18_2532530_2576505	0/0	t0019	2266	1	0	1	0	0	0	copy fasta	METTL4	chr18	2532530	2576505
METTL4_chr18_2532530_2576505	0/0	t0020	2266	1	1	0	0	0	0	copy fasta	METTL4	chr18	2532530	2576505
METTL4_chr18_2532530_2576505	0/0	t0021	2266	1	0	0	1	0	0	copy fasta	METTL4	chr18	2532530	2576505
METTL4_chr18_2532530_2576505	0/0	t0022	2266	1	1	0	0	0	0	copy fasta	METTL4	chr18	2532530	2576505
METTL4_chr18_2532530_2576505	0/0	t0023	2266	1	0	1	0	0	0	copy fasta	METTL4	chr18	2532530	2576505
METTL4_chr18_2532530_2576505	0/0	t0024	2265	1	1	0	0	0	0	copy fasta	METTL4	chr18	2532530	2576505
METTL4_chr18_2532530_2576505	0/0	t0025	2266	1	1	0	0	0	0	copy fasta	METTL4	chr18	2532530	2576505
METTL4_chr18_2532530_2576505	0/0	t0026	2265	1	1	0	0	0	0	copy fasta	METTL4	chr18	2532530	2576505
METTL4_chr18_2532530_2576505	0/0	t0027	2266	1	0	0	1	0	0	copy fasta	METTL4	chr18	2532530	2576505
METTL4_chr18_2532530_2576505	0/0	t0028	2266	1	0	0	1	0	0	copy fasta	METTL4	chr18	2532530	2576505
METTL5_chr2_169806757_169829905	1/1	t0001	372	410	96	66	188	16	42	copy fasta	METTL5	chr2	169806757	169829905
METTL5_chr2_169806757_169829905	0/0	t0002	372	2	2	0	0	0	0	copy fasta	METTL5	chr2	169806757	169829905
METTL6_chr3_15404760_15432544	0/1	t0001	1764	175	20	30	97	6	21	copy fasta	METTL6	chr3	15404760	15432544
METTL6_chr3_15404760_15432544	0/0	t0002	1764	132	27	14	65	4	22	copy fasta	METTL6	chr3	15404760	15432544
METTL6_chr3_15404760_15432544	1/0	t0003	1764	26	0	19	4	1	1	copy fasta	METTL6	chr3	15404760	15432544
METTL6_chr3_15404760_15432544	0/0	t0004	1764	25	12	2	9	0	2	copy fasta	METTL6	chr3	15404760	15432544
METTL6_chr3_15404760_15432544	0/0	t0005	1764	13	12	1	0	0	0	copy fasta	METTL6	chr3	15404760	15432544
METTL6_chr3_15404760_15432544	0/0	t0006	1764	5	5	0	0	0	0	copy fasta	METTL6	chr3	15404760	15432544
METTL6_chr3_15404760_15432544	0/0	t0007	1764	4	4	0	0	0	0	copy fasta	METTL6	chr3	15404760	15432544
METTL6_chr3_15404760_15432544	0/0	t0008	1764	3	3	0	0	0	0	copy fasta	METTL6	chr3	15404760	15432544
METTL6_chr3_15404760_15432544	0/0	t0009	1764	3	2	1	0	0	0	copy fasta	METTL6	chr3	15404760	15432544
METTL6_chr3_15404760_15432544	0/0	t0010	1764	2	2	0	0	0	0	copy fasta	METTL6	chr3	15404760	15432544
METTL6_chr3_15404760_15432544	0/0	t0011	1764	2	0	1	0	1	0	copy fasta	METTL6	chr3	15404760	15432544
METTL6_chr3_15404760_15432544	0/0	t0012	1764	2	0	0	2	0	0	copy fasta	METTL6	chr3	15404760	15432544
METTL6_chr3_15404760_15432544	0/0	t0013	1764	2	2	0	0	0	0	copy fasta	METTL6	chr3	15404760	15432544
METTL6_chr3_15404760_15432544	0/0	t0014	1764	2	0	2	0	0	0	copy fasta	METTL6	chr3	15404760	15432544
METTL6_chr3_15404760_15432544	0/0	t0015	1764	1	1	0	0	0	0	copy fasta	METTL6	chr3	15404760	15432544
METTL6_chr3_15404760_15432544	0/0	t0016	1764	1	1	0	0	0	0	copy fasta	METTL6	chr3	15404760	15432544
METTL6_chr3_15404760_15432544	0/0	t0017	1764	1	0	0	1	0	0	copy fasta	METTL6	chr3	15404760	15432544
METTL6_chr3_15404760_15432544	0/0	t0018	1764	1	1	0	0	0	0	copy fasta	METTL6	chr3	15404760	15432544
METTL6_chr3_15404760_15432544	0/0	t0019	1764	1	1	0	0	0	0	copy fasta	METTL6	chr3	15404760	15432544
METTL6_chr3_15404760_15432544	0/0	t0020	1764	1	0	0	1	0	0	copy fasta	METTL6	chr3	15404760	15432544
METTL6_chr3_15404760_15432544	0/0	t0021	1764	1	1	0	0	0	0	copy fasta	METTL6	chr3	15404760	15432544
METTL6_chr3_15404760_15432544	0/0	t0022	1764	1	0	0	1	0	0	copy fasta	METTL6	chr3	15404760	15432544
METTL6_chr3_15404760_15432544	0/0	t0023	1764	1	1	0	0	0	0	copy fasta	METTL6	chr3	15404760	15432544
METTL6_chr3_15404760_15432544	0/0	t0024	1764	1	1	0	0	0	0	copy fasta	METTL6	chr3	15404760	15432544
METTL8_chr2_171310746_171438990	0/0	t0001	8545	79	17	24	29	1	8	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	t0002	8545	31	0	0	31	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	t0003	8544	25	2	4	16	0	3	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	t0004	8545	21	1	2	17	0	1	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	t0005	8546	10	4	4	0	1	1	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	t0006	8545	9	0	0	9	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	t0007	8545	8	0	1	5	0	2	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	t0008	8546	7	2	3	1	0	1	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	t0009	8542	7	0	0	7	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	t0010	8546	6	0	2	2	0	2	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	t0011	8545	6	0	5	1	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	t0012	8547	5	5	0	0	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	t0013	8544	4	4	0	0	0	0	copy fasta	METTL8	chr2	171310746	171438990