JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
METTL8_chr2_171310746_171438990	0/0	t0064	8545	1	0	1	0	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	t0065	8545	1	0	0	0	0	1	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	t0066	8545	1	0	1	0	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	t0067	8544	1	0	0	1	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	t0068	8545	1	0	0	0	1	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	t0069	8547	1	0	1	0	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	t0070	8546	1	0	0	0	1	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	t0071	8546	1	0	1	0	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	t0072	8546	1	1	0	0	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	t0073	8544	1	0	0	1	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	t0074	8543	1	1	0	0	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	t0075	8544	1	0	0	1	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	t0076	8544	1	0	0	1	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	t0077	8544	1	1	0	0	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	t0078	8543	1	1	0	0	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	t0079	8546	1	0	0	1	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	t0080	8546	1	0	0	1	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	t0081	8545	1	0	1	0	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	t0082	8545	1	1	0	0	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	t0083	8546	1	0	1	0	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	t0084	8545	1	0	0	0	0	1	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	t0085	8547	1	1	0	0	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	t0086	8547	1	0	1	0	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	t0087	8547	1	1	0	0	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	t0088	8547	1	1	0	0	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	t0089	8547	1	1	0	0	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	t0090	8546	1	1	0	0	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	t0091	8547	1	1	0	0	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	t0092	8545	1	0	1	0	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	t0093	8545	1	1	0	0	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	t0094	8544	1	1	0	0	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL9_chr16_21594577_21662471	1/0	t0001	2197	321	67	63	147	9	34	copy fasta	METTL9	chr16	21594577	21662471
METTL9_chr16_21594577_21662471	0/0	t0002	2197	21	0	0	19	0	2	copy fasta	METTL9	chr16	21594577	21662471
METTL9_chr16_21594577_21662471	0/0	t0003	2196	3	0	0	3	0	0	copy fasta	METTL9	chr16	21594577	21662471
METTL9_chr16_21594577_21662471	0/0	t0004	2197	2	0	0	2	0	0	copy fasta	METTL9	chr16	21594577	21662471
METTL9_chr16_21594577_21662471	0/0	t0005	2197	2	2	0	0	0	0	copy fasta	METTL9	chr16	21594577	21662471
METTL9_chr16_21594577_21662471	0/0	t0006	2197	2	0	0	0	0	2	copy fasta	METTL9	chr16	21594577	21662471
METTL9_chr16_21594577_21662471	0/0	t0007	2197	2	0	0	2	0	0	copy fasta	METTL9	chr16	21594577	21662471
METTL9_chr16_21594577_21662471	0/1	t0008	2197	2	0	1	0	0	0	copy fasta	METTL9	chr16	21594577	21662471
METTL9_chr16_21594577_21662471	0/0	t0009	2197	1	0	0	1	0	0	copy fasta	METTL9	chr16	21594577	21662471
METTL9_chr16_21594577_21662471	0/0	t0010	2197	1	0	0	1	0	0	copy fasta	METTL9	chr16	21594577	21662471
METTL9_chr16_21594577_21662471	0/0	t0011	2197	1	0	0	1	0	0	copy fasta	METTL9	chr16	21594577	21662471
METTL9_chr16_21594577_21662471	0/0	t0012	2197	1	0	1	0	0	0	copy fasta	METTL9	chr16	21594577	21662471
METTL9_chr16_21594577_21662471	0/0	t0013	2197	1	0	1	0	0	0	copy fasta	METTL9	chr16	21594577	21662471
METTL9_chr16_21594577_21662471	0/0	t0014	2197	1	0	0	1	0	0	copy fasta	METTL9	chr16	21594577	21662471
METTL9_chr16_21594577_21662471	0/0	t0015	2197	1	0	0	0	1	0	copy fasta	METTL9	chr16	21594577	21662471
METTL9_chr16_21594577_21662471	0/0	t0016	2197	1	1	0	0	0	0	copy fasta	METTL9	chr16	21594577	21662471
METTL9_chr16_21594577_21662471	0/0	t0017	2197	1	0	0	1	0	0	copy fasta	METTL9	chr16	21594577	21662471
MET_chr7_116667196_116803377	0/0	t0001	2650	61	4	10	38	2	7	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	1/1	t0002	2650	51	25	8	12	1	3	copy fasta	MET	chr7	116667196	116803377