JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MET_chr7_116667196_116803377	0/0	t0003	2650	48	9	5	26	3	5	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	t0004	2650	45	1	11	20	2	11	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	t0005	2650	38	6	11	17	1	3	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	t0006	2650	25	14	2	8	0	1	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	t0007	2650	20	8	5	5	0	2	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	t0008	2650	18	2	5	7	0	4	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	t0009	2650	7	7	0	0	0	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	t0010	2650	3	3	0	0	0	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	t0011	2650	3	0	0	3	0	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	t0012	2650	2	2	0	0	0	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	t0013	2650	2	0	0	2	0	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	t0014	2650	1	1	0	0	0	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	t0015	2650	1	1	0	0	0	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	t0016	2650	1	1	0	0	0	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	t0017	2650	1	1	0	0	0	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	t0018	2650	1	1	0	0	0	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	t0019	2650	1	0	0	1	0	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	t0020	2650	1	1	0	0	0	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	t0021	2650	1	0	1	0	0	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	t0022	2650	1	1	0	0	0	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	t0023	2650	1	1	0	0	0	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	t0024	2650	1	0	1	0	0	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	t0025	2650	1	1	0	0	0	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	t0026	2650	1	0	0	1	0	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	t0027	2650	1	0	0	0	1	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	t0028	2650	1	0	1	0	0	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	t0029	2650	1	1	0	0	0	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	t0030	2650	1	1	0	0	0	0	copy fasta	MET	chr7	116667196	116803377
MEX3A_chr1_156067013_156087465	0/0	t0001	5029	135	30	10	81	3	11	copy fasta	MEX3A	chr1	156067013	156087465
MEX3A_chr1_156067013_156087465	0/0	t0002	5029	69	1	23	17	6	22	copy fasta	MEX3A	chr1	156067013	156087465
MEX3A_chr1_156067013_156087465	1/0	t0003	5029	31	12	6	9	0	3	copy fasta	MEX3A	chr1	156067013	156087465
MEX3A_chr1_156067013_156087465	0/1	t0004	5029	28	1	8	14	3	1	copy fasta	MEX3A	chr1	156067013	156087465
MEX3A_chr1_156067013_156087465	0/0	t0005	5029	8	8	0	0	0	0	copy fasta	MEX3A	chr1	156067013	156087465
MEX3A_chr1_156067013_156087465	0/0	t0006	5029	8	4	0	1	0	3	copy fasta	MEX3A	chr1	156067013	156087465
MEX3A_chr1_156067013_156087465	0/0	t0007	5029	8	8	0	0	0	0	copy fasta	MEX3A	chr1	156067013	156087465
MEX3A_chr1_156067013_156087465	0/0	t0008	5029	7	6	1	0	0	0	copy fasta	MEX3A	chr1	156067013	156087465
MEX3A_chr1_156067013_156087465	0/0	t0009	5030	4	1	0	3	0	0	copy fasta	MEX3A	chr1	156067013	156087465
MEX3A_chr1_156067013_156087465	0/0	t0010	5029	4	4	0	0	0	0	copy fasta	MEX3A	chr1	156067013	156087465
MEX3A_chr1_156067013_156087465	0/0	t0011	5029	4	0	4	0	0	0	copy fasta	MEX3A	chr1	156067013	156087465
MEX3A_chr1_156067013_156087465	0/0	t0012	5029	3	0	0	3	0	0	copy fasta	MEX3A	chr1	156067013	156087465
MEX3A_chr1_156067013_156087465	0/0	t0013	5029	2	1	1	0	0	0	copy fasta	MEX3A	chr1	156067013	156087465
MEX3A_chr1_156067013_156087465	0/0	t0014	5029	2	0	2	0	0	0	copy fasta	MEX3A	chr1	156067013	156087465
MEX3A_chr1_156067013_156087465	0/0	t0015	5029	2	2	0	0	0	0	copy fasta	MEX3A	chr1	156067013	156087465
MEX3A_chr1_156067013_156087465	0/0	t0016	5030	2	0	0	2	0	0	copy fasta	MEX3A	chr1	156067013	156087465
MEX3A_chr1_156067013_156087465	0/0	t0017	5029	2	2	0	0	0	0	copy fasta	MEX3A	chr1	156067013	156087465
MEX3A_chr1_156067013_156087465	0/0	t0018	5029	2	2	0	0	0	0	copy fasta	MEX3A	chr1	156067013	156087465
MEX3A_chr1_156067013_156087465	0/0	t0019	5029	2	2	0	0	0	0	copy fasta	MEX3A	chr1	156067013	156087465
MEX3A_chr1_156067013_156087465	0/0	t0020	5029	1	0	1	0	0	0	copy fasta	MEX3A	chr1	156067013	156087465
MEX3A_chr1_156067013_156087465	0/0	t0021	5029	1	0	1	0	0	0	copy fasta	MEX3A	chr1	156067013	156087465
MEX3A_chr1_156067013_156087465	0/0	t0022	5030	1	0	0	1	0	0	copy fasta	MEX3A	chr1	156067013	156087465