JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MEX3A_chr1_156067013_156087465	0/0	t0023	5029	1	0	1	0	0	0	copy fasta	MEX3A	chr1	156067013	156087465
MEX3A_chr1_156067013_156087465	0/0	t0024	5029	1	0	0	0	0	1	copy fasta	MEX3A	chr1	156067013	156087465
MEX3A_chr1_156067013_156087465	0/0	t0025	5030	1	0	0	1	0	0	copy fasta	MEX3A	chr1	156067013	156087465
MEX3A_chr1_156067013_156087465	0/0	t0026	5029	1	1	0	0	0	0	copy fasta	MEX3A	chr1	156067013	156087465
MEX3A_chr1_156067013_156087465	0/0	t0027	5029	1	0	0	1	0	0	copy fasta	MEX3A	chr1	156067013	156087465
MEX3A_chr1_156067013_156087465	0/0	t0028	5029	1	0	0	1	0	0	copy fasta	MEX3A	chr1	156067013	156087465
MEX3A_chr1_156067013_156087465	0/0	t0029	5029	1	0	0	0	0	1	copy fasta	MEX3A	chr1	156067013	156087465
MEX3A_chr1_156067013_156087465	0/0	t0030	5029	1	1	0	0	0	0	copy fasta	MEX3A	chr1	156067013	156087465
MEX3A_chr1_156067013_156087465	0/0	t0031	5029	1	0	0	1	0	0	copy fasta	MEX3A	chr1	156067013	156087465
MEX3A_chr1_156067013_156087465	0/0	t0032	5029	1	1	0	0	0	0	copy fasta	MEX3A	chr1	156067013	156087465
MEX3A_chr1_156067013_156087465	0/0	t0033	5029	1	1	0	0	0	0	copy fasta	MEX3A	chr1	156067013	156087465
MEX3A_chr1_156067013_156087465	0/0	t0034	5029	1	0	0	1	0	0	copy fasta	MEX3A	chr1	156067013	156087465
MEX3A_chr1_156067013_156087465	0/0	t0035	5030	1	1	0	0	0	0	copy fasta	MEX3A	chr1	156067013	156087465
MEX3A_chr1_156067013_156087465	0/0	t0036	5029	1	1	0	0	0	0	copy fasta	MEX3A	chr1	156067013	156087465
MEX3B_chr15_82036778_82051018	0/1	t0001	1696	364	78	79	149	15	42	copy fasta	MEX3B	chr15	82036778	82051018
MEX3B_chr15_82036778_82051018	0/0	t0002	1696	56	9	3	41	1	2	copy fasta	MEX3B	chr15	82036778	82051018
MEX3B_chr15_82036778_82051018	0/0	t0003	1696	10	4	0	6	0	0	copy fasta	MEX3B	chr15	82036778	82051018
MEX3B_chr15_82036778_82051018	0/0	t0004	1697	7	1	1	5	0	0	copy fasta	MEX3B	chr15	82036778	82051018
MEX3B_chr15_82036778_82051018	0/0	t0005	1696	2	0	0	2	0	0	copy fasta	MEX3B	chr15	82036778	82051018
MEX3B_chr15_82036778_82051018	0/0	t0006	1697	2	0	0	2	0	0	copy fasta	MEX3B	chr15	82036778	82051018
MEX3B_chr15_82036778_82051018	0/0	t0007	1696	1	0	1	0	0	0	copy fasta	MEX3B	chr15	82036778	82051018
MEX3B_chr15_82036778_82051018	1/0	t0008	1696	1	0	0	0	0	0	copy fasta	MEX3B	chr15	82036778	82051018
MEX3B_chr15_82036778_82051018	0/0	t0009	1696	1	0	0	0	0	1	copy fasta	MEX3B	chr15	82036778	82051018
MEX3B_chr15_82036778_82051018	0/0	t0010	1696	1	0	0	0	0	1	copy fasta	MEX3B	chr15	82036778	82051018
MEX3B_chr15_82036778_82051018	0/0	t0011	1696	1	0	0	1	0	0	copy fasta	MEX3B	chr15	82036778	82051018
MEX3B_chr15_82036778_82051018	0/0	t0012	1696	1	0	0	1	0	0	copy fasta	MEX3B	chr15	82036778	82051018
MEX3B_chr15_82036778_82051018	0/0	t0013	1696	1	1	0	0	0	0	copy fasta	MEX3B	chr15	82036778	82051018
MEX3B_chr15_82036778_82051018	0/0	t0014	1696	1	0	0	1	0	0	copy fasta	MEX3B	chr15	82036778	82051018
MEX3B_chr15_82036778_82051018	0/0	t0015	1696	1	1	0	0	0	0	copy fasta	MEX3B	chr15	82036778	82051018
MEX3C_chr18_51169550_51202681	1/0	t0001	2163	351	71	57	176	16	30	copy fasta	MEX3C	chr18	51169550	51202681
MEX3C_chr18_51169550_51202681	0/0	t0002	2163	6	3	0	3	0	0	copy fasta	MEX3C	chr18	51169550	51202681
MEX3C_chr18_51169550_51202681	0/0	t0003	2163	3	2	1	0	0	0	copy fasta	MEX3C	chr18	51169550	51202681
MEX3C_chr18_51169550_51202681	0/0	t0004	2166	2	2	0	0	0	0	copy fasta	MEX3C	chr18	51169550	51202681
MEX3C_chr18_51169550_51202681	0/0	t0005	2163	2	0	2	0	0	0	copy fasta	MEX3C	chr18	51169550	51202681
MEX3C_chr18_51169550_51202681	0/0	t0006	2163	2	2	0	0	0	0	copy fasta	MEX3C	chr18	51169550	51202681
MEX3C_chr18_51169550_51202681	0/0	t0007	2163	2	0	2	0	0	0	copy fasta	MEX3C	chr18	51169550	51202681
MEX3C_chr18_51169550_51202681	0/0	t0008	2166	1	1	0	0	0	0	copy fasta	MEX3C	chr18	51169550	51202681
MEX3C_chr18_51169550_51202681	0/0	t0009	2163	1	0	0	1	0	0	copy fasta	MEX3C	chr18	51169550	51202681
MEX3C_chr18_51169550_51202681	0/0	t0010	2163	1	1	0	0	0	0	copy fasta	MEX3C	chr18	51169550	51202681
MEX3C_chr18_51169550_51202681	0/0	t0011	2163	1	0	0	0	0	1	copy fasta	MEX3C	chr18	51169550	51202681
MEX3C_chr18_51169550_51202681	0/0	t0012	2163	1	1	0	0	0	0	copy fasta	MEX3C	chr18	51169550	51202681
MEX3C_chr18_51169550_51202681	0/1	t0013	2163	1	0	0	0	0	0	copy fasta	MEX3C	chr18	51169550	51202681
MEX3C_chr18_51169550_51202681	0/0	t0014	2163	1	0	0	0	0	1	copy fasta	MEX3C	chr18	51169550	51202681
MEX3C_chr18_51169550_51202681	0/0	t0015	2163	1	1	0	0	0	0	copy fasta	MEX3C	chr18	51169550	51202681
MEX3D_chr19_1549672_1573325	0/1	t0001	1162	109	39	19	29	2	19	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	t0002	1160	77	9	26	23	9	10	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	t0003	1161	48	15	8	19	3	3	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	t0004	1160	48	1	4	42	0	1	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	t0005	1162	14	0	2	11	0	1	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	t0006	1161	10	0	1	6	0	3	copy fasta	MEX3D	chr19	1549672	1573325