JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MEX3D_chr19_1549672_1573325	0/0	t0007	1161	9	2	3	2	1	1	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	t0008	1162	8	0	8	0	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	t0009	1152	4	0	0	4	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	t0010	1161	4	2	1	1	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	t0011	1160	4	4	0	0	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	t0012	1162	4	1	2	1	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	t0013	1161	3	0	2	1	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	t0014	1175	3	0	0	3	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	t0015	1162	3	0	1	2	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	t0016	1164	3	2	1	0	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	t0017	1163	2	0	0	2	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	1/0	t0018	1159	2	0	0	0	1	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	t0019	1160	2	0	0	0	2	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	t0020	1159	2	0	0	2	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	t0021	1152	1	0	0	1	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	t0022	1159	1	0	0	1	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	t0023	1162	1	1	0	0	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	t0024	1161	1	0	0	1	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	t0025	1177	1	0	0	1	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	t0026	1160	1	0	0	1	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	t0027	1159	1	0	0	1	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	t0028	1160	1	0	0	1	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	t0029	1162	1	0	1	0	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	t0030	1160	1	0	0	1	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	t0031	1164	1	1	0	0	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	t0032	1163	1	1	0	0	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	t0033	1161	1	0	1	0	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MFAP1_chr15_43799492_43829690	1/1	t0001	724	334	84	48	161	9	30	copy fasta	MFAP1	chr15	43799492	43829690
MFAP1_chr15_43799492_43829690	0/0	t0002	724	2	2	0	0	0	0	copy fasta	MFAP1	chr15	43799492	43829690
MFAP1_chr15_43799492_43829690	0/0	t0003	724	1	1	0	0	0	0	copy fasta	MFAP1	chr15	43799492	43829690
MFAP1_chr15_43799492_43829690	0/0	t0004	724	1	0	0	0	1	0	copy fasta	MFAP1	chr15	43799492	43829690
MFAP1_chr15_43799492_43829690	0/0	t0005	724	1	0	0	1	0	0	copy fasta	MFAP1	chr15	43799492	43829690
MFAP1_chr15_43799492_43829690	0/0	t0006	724	1	1	0	0	0	0	copy fasta	MFAP1	chr15	43799492	43829690
MFAP2_chr1_16969502_16985620	1/0	t0001	494	239	39	39	135	8	17	copy fasta	MFAP2	chr1	16969502	16985620
MFAP2_chr1_16969502_16985620	0/1	t0002	494	167	57	36	51	8	14	copy fasta	MFAP2	chr1	16969502	16985620
MFAP2_chr1_16969502_16985620	0/0	t0003	494	1	0	0	0	0	1	copy fasta	MFAP2	chr1	16969502	16985620
MFAP2_chr1_16969502_16985620	0/0	t0004	494	1	0	1	0	0	0	copy fasta	MFAP2	chr1	16969502	16985620
MFAP3L_chr4_169981602_170031395	1/1	t0001	5072	137	11	26	71	7	20	copy fasta	MFAP3L	chr4	169981602	170031395
MFAP3L_chr4_169981602_170031395	0/0	t0002	5072	44	2	0	32	0	10	copy fasta	MFAP3L	chr4	169981602	170031395
MFAP3L_chr4_169981602_170031395	0/0	t0003	5072	20	12	2	6	0	0	copy fasta	MFAP3L	chr4	169981602	170031395
MFAP3L_chr4_169981602_170031395	0/0	t0004	5072	17	1	11	0	1	4	copy fasta	MFAP3L	chr4	169981602	170031395
MFAP3L_chr4_169981602_170031395	0/0	t0005	5072	12	0	6	0	4	2	copy fasta	MFAP3L	chr4	169981602	170031395
MFAP3L_chr4_169981602_170031395	0/0	t0006	5072	11	11	0	0	0	0	copy fasta	MFAP3L	chr4	169981602	170031395
MFAP3L_chr4_169981602_170031395	0/0	t0007	5072	9	1	2	4	0	2	copy fasta	MFAP3L	chr4	169981602	170031395
MFAP3L_chr4_169981602_170031395	0/0	t0008	5072	7	3	1	1	1	1	copy fasta	MFAP3L	chr4	169981602	170031395
MFAP3L_chr4_169981602_170031395	0/0	t0009	5072	7	7	0	0	0	0	copy fasta	MFAP3L	chr4	169981602	170031395
MFAP3L_chr4_169981602_170031395	0/0	t0010	5068	7	7	0	0	0	0	copy fasta	MFAP3L	chr4	169981602	170031395
MFAP3L_chr4_169981602_170031395	0/0	t0011	5072	6	6	0	0	0	0	copy fasta	MFAP3L	chr4	169981602	170031395
MFAP3L_chr4_169981602_170031395	0/0	t0012	5072	5	5	0	0	0	0	copy fasta	MFAP3L	chr4	169981602	170031395
MFAP3L_chr4_169981602_170031395	0/0	t0013	5072	4	3	1	0	0	0	copy fasta	MFAP3L	chr4	169981602	170031395