JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MFAP3L_chr4_169981602_170031395	0/0	t0014	5068	4	4	0	0	0	0	copy fasta	MFAP3L	chr4	169981602	170031395
MFAP3L_chr4_169981602_170031395	0/0	t0015	5072	3	0	0	3	0	0	copy fasta	MFAP3L	chr4	169981602	170031395
MFAP3L_chr4_169981602_170031395	0/0	t0016	5072	3	3	0	0	0	0	copy fasta	MFAP3L	chr4	169981602	170031395
MFAP3L_chr4_169981602_170031395	0/0	t0017	5070	3	2	1	0	0	0	copy fasta	MFAP3L	chr4	169981602	170031395
MFAP3L_chr4_169981602_170031395	0/0	t0018	5072	3	1	0	0	1	1	copy fasta	MFAP3L	chr4	169981602	170031395
MFAP3L_chr4_169981602_170031395	0/0	t0019	5072	2	2	0	0	0	0	copy fasta	MFAP3L	chr4	169981602	170031395
MFAP3L_chr4_169981602_170031395	0/0	t0020	5072	2	2	0	0	0	0	copy fasta	MFAP3L	chr4	169981602	170031395
MFAP3L_chr4_169981602_170031395	0/0	t0021	5072	2	0	0	0	0	2	copy fasta	MFAP3L	chr4	169981602	170031395
MFAP3L_chr4_169981602_170031395	0/0	t0022	5072	1	0	0	0	1	0	copy fasta	MFAP3L	chr4	169981602	170031395
MFAP3L_chr4_169981602_170031395	0/0	t0023	5072	1	0	0	0	0	1	copy fasta	MFAP3L	chr4	169981602	170031395
MFAP3L_chr4_169981602_170031395	0/0	t0024	5072	1	0	0	1	0	0	copy fasta	MFAP3L	chr4	169981602	170031395
MFAP3L_chr4_169981602_170031395	0/0	t0025	5072	1	1	0	0	0	0	copy fasta	MFAP3L	chr4	169981602	170031395
MFAP3L_chr4_169981602_170031395	0/0	t0026	5072	1	0	1	0	0	0	copy fasta	MFAP3L	chr4	169981602	170031395
MFAP3L_chr4_169981602_170031395	0/0	t0027	5072	1	0	0	0	0	1	copy fasta	MFAP3L	chr4	169981602	170031395
MFAP3L_chr4_169981602_170031395	0/0	t0028	5072	1	0	0	1	0	0	copy fasta	MFAP3L	chr4	169981602	170031395
MFAP3L_chr4_169981602_170031395	0/0	t0029	5072	1	0	0	1	0	0	copy fasta	MFAP3L	chr4	169981602	170031395
MFAP3L_chr4_169981602_170031395	0/0	t0030	5072	1	0	1	0	0	0	copy fasta	MFAP3L	chr4	169981602	170031395
MFAP3L_chr4_169981602_170031395	0/0	t0031	5072	1	0	0	0	0	1	copy fasta	MFAP3L	chr4	169981602	170031395
MFAP3L_chr4_169981602_170031395	0/0	t0032	5072	1	1	0	0	0	0	copy fasta	MFAP3L	chr4	169981602	170031395
MFAP3L_chr4_169981602_170031395	0/0	t0033	5072	1	1	0	0	0	0	copy fasta	MFAP3L	chr4	169981602	170031395
MFAP3L_chr4_169981602_170031395	0/0	t0034	5072	1	0	0	1	0	0	copy fasta	MFAP3L	chr4	169981602	170031395
MFAP3L_chr4_169981602_170031395	0/0	t0035	5072	1	0	0	0	1	0	copy fasta	MFAP3L	chr4	169981602	170031395
MFAP3L_chr4_169981602_170031395	0/0	t0036	5072	1	1	0	0	0	0	copy fasta	MFAP3L	chr4	169981602	170031395
MFAP3L_chr4_169981602_170031395	0/0	t0037	5072	1	1	0	0	0	0	copy fasta	MFAP3L	chr4	169981602	170031395
MFAP3L_chr4_169981602_170031395	0/0	t0038	5072	1	1	0	0	0	0	copy fasta	MFAP3L	chr4	169981602	170031395
MFAP3L_chr4_169981602_170031395	0/0	t0039	5068	1	1	0	0	0	0	copy fasta	MFAP3L	chr4	169981602	170031395
MFAP3L_chr4_169981602_170031395	0/0	t0040	5072	1	0	0	1	0	0	copy fasta	MFAP3L	chr4	169981602	170031395
MFAP3L_chr4_169981602_170031395	0/0	t0041	5072	1	0	0	0	0	1	copy fasta	MFAP3L	chr4	169981602	170031395
MFAP3_chr5_154033967_154062450	0/0	t0001	3949	231	40	34	117	9	31	copy fasta	MFAP3	chr5	154033967	154062450
MFAP3_chr5_154033967_154062450	1/0	t0002	3949	66	16	9	29	1	10	copy fasta	MFAP3	chr5	154033967	154062450
MFAP3_chr5_154033967_154062450	0/0	t0003	3949	31	14	8	4	4	1	copy fasta	MFAP3	chr5	154033967	154062450
MFAP3_chr5_154033967_154062450	0/0	t0004	3949	19	0	0	19	0	0	copy fasta	MFAP3	chr5	154033967	154062450
MFAP3_chr5_154033967_154062450	0/0	t0005	3949	13	8	2	0	0	3	copy fasta	MFAP3	chr5	154033967	154062450
MFAP3_chr5_154033967_154062450	0/1	t0006	3949	9	1	7	0	0	0	copy fasta	MFAP3	chr5	154033967	154062450
MFAP3_chr5_154033967_154062450	0/0	t0007	3947	7	0	7	0	0	0	copy fasta	MFAP3	chr5	154033967	154062450
MFAP3_chr5_154033967_154062450	0/0	t0008	3949	6	4	0	2	0	0	copy fasta	MFAP3	chr5	154033967	154062450
MFAP3_chr5_154033967_154062450	0/0	t0009	3949	6	6	0	0	0	0	copy fasta	MFAP3	chr5	154033967	154062450
MFAP3_chr5_154033967_154062450	0/0	t0010	3949	2	2	0	0	0	0	copy fasta	MFAP3	chr5	154033967	154062450
MFAP3_chr5_154033967_154062450	0/0	t0011	3949	2	2	0	0	0	0	copy fasta	MFAP3	chr5	154033967	154062450
MFAP3_chr5_154033967_154062450	0/0	t0012	3949	2	0	0	2	0	0	copy fasta	MFAP3	chr5	154033967	154062450
MFAP3_chr5_154033967_154062450	0/0	t0013	3949	2	0	0	2	0	0	copy fasta	MFAP3	chr5	154033967	154062450
MFAP3_chr5_154033967_154062450	0/0	t0014	3949	1	0	0	1	0	0	copy fasta	MFAP3	chr5	154033967	154062450
MFAP3_chr5_154033967_154062450	0/0	t0015	3929	1	1	0	0	0	0	copy fasta	MFAP3	chr5	154033967	154062450
MFAP3_chr5_154033967_154062450	0/0	t0016	3949	1	0	1	0	0	0	copy fasta	MFAP3	chr5	154033967	154062450
MFAP3_chr5_154033967_154062450	0/0	t0017	3949	1	0	0	0	0	1	copy fasta	MFAP3	chr5	154033967	154062450
MFAP3_chr5_154033967_154062450	0/0	t0018	3949	1	1	0	0	0	0	copy fasta	MFAP3	chr5	154033967	154062450
MFAP3_chr5_154033967_154062450	0/0	t0019	3949	1	0	1	0	0	0	copy fasta	MFAP3	chr5	154033967	154062450
MFAP3_chr5_154033967_154062450	0/0	t0020	3947	1	1	0	0	0	0	copy fasta	MFAP3	chr5	154033967	154062450
MFAP3_chr5_154033967_154062450	0/0	t0021	3949	1	0	0	1	0	0	copy fasta	MFAP3	chr5	154033967	154062450
MFAP3_chr5_154033967_154062450	0/0	t0022	3949	1	1	0	0	0	0	copy fasta	MFAP3	chr5	154033967	154062450