JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MFAP3_chr5_154033967_154062450	0/0	t0023	3949	1	0	0	1	0	0	copy fasta	MFAP3	chr5	154033967	154062450
MFAP3_chr5_154033967_154062450	0/0	t0024	3949	1	0	1	0	0	0	copy fasta	MFAP3	chr5	154033967	154062450
MFAP3_chr5_154033967_154062450	0/0	t0025	3949	1	0	0	1	0	0	copy fasta	MFAP3	chr5	154033967	154062450
MFAP3_chr5_154033967_154062450	0/0	t0026	3949	1	1	0	0	0	0	copy fasta	MFAP3	chr5	154033967	154062450
MFAP3_chr5_154033967_154062450	0/0	t0027	3949	1	0	0	1	0	0	copy fasta	MFAP3	chr5	154033967	154062450
MFAP3_chr5_154033967_154062450	0/0	t0028	3949	1	0	0	1	0	0	copy fasta	MFAP3	chr5	154033967	154062450
MFAP3_chr5_154033967_154062450	0/0	t0029	3949	1	0	1	0	0	0	copy fasta	MFAP3	chr5	154033967	154062450
MFAP3_chr5_154033967_154062450	0/0	t0030	3949	1	0	1	0	0	0	copy fasta	MFAP3	chr5	154033967	154062450
MFAP3_chr5_154033967_154062450	0/0	t0031	3949	1	0	0	1	0	0	copy fasta	MFAP3	chr5	154033967	154062450
MFAP4_chr17_19378445_19392190	0/1	t0001	1053	283	64	49	124	12	33	copy fasta	MFAP4	chr17	19378445	19392190
MFAP4_chr17_19378445_19392190	1/0	t0002	1053	56	21	7	17	0	10	copy fasta	MFAP4	chr17	19378445	19392190
MFAP4_chr17_19378445_19392190	0/0	t0003	1053	17	2	12	0	2	1	copy fasta	MFAP4	chr17	19378445	19392190
MFAP4_chr17_19378445_19392190	0/0	t0004	1051	7	0	4	3	0	0	copy fasta	MFAP4	chr17	19378445	19392190
MFAP4_chr17_19378445_19392190	0/0	t0005	1053	2	0	0	2	0	0	copy fasta	MFAP4	chr17	19378445	19392190
MFAP4_chr17_19378445_19392190	0/0	t0006	1053	1	1	0	0	0	0	copy fasta	MFAP4	chr17	19378445	19392190
MFAP4_chr17_19378445_19392190	0/0	t0007	1053	1	0	0	1	0	0	copy fasta	MFAP4	chr17	19378445	19392190
MFAP4_chr17_19378445_19392190	0/0	t0008	1053	1	0	0	1	0	0	copy fasta	MFAP4	chr17	19378445	19392190
MFAP5_chr12_8640943_8667826	1/0	t0001	2351	290	59	46	141	5	38	copy fasta	MFAP5	chr12	8640943	8667826
MFAP5_chr12_8640943_8667826	0/0	t0002	2351	19	4	10	0	3	2	copy fasta	MFAP5	chr12	8640943	8667826
MFAP5_chr12_8640943_8667826	0/0	t0003	2352	12	9	3	0	0	0	copy fasta	MFAP5	chr12	8640943	8667826
MFAP5_chr12_8640943_8667826	0/1	t0004	2351	11	1	4	0	3	2	copy fasta	MFAP5	chr12	8640943	8667826
MFAP5_chr12_8640943_8667826	0/0	t0005	2351	10	4	0	4	0	2	copy fasta	MFAP5	chr12	8640943	8667826
MFAP5_chr12_8640943_8667826	0/0	t0006	2351	6	6	0	0	0	0	copy fasta	MFAP5	chr12	8640943	8667826
MFAP5_chr12_8640943_8667826	0/0	t0007	2350	5	0	5	0	0	0	copy fasta	MFAP5	chr12	8640943	8667826
MFAP5_chr12_8640943_8667826	0/0	t0008	2351	4	2	2	0	0	0	copy fasta	MFAP5	chr12	8640943	8667826
MFAP5_chr12_8640943_8667826	0/0	t0009	2352	3	0	0	2	0	1	copy fasta	MFAP5	chr12	8640943	8667826
MFAP5_chr12_8640943_8667826	0/0	t0010	2351	2	2	0	0	0	0	copy fasta	MFAP5	chr12	8640943	8667826
MFAP5_chr12_8640943_8667826	0/0	t0011	2351	2	2	0	0	0	0	copy fasta	MFAP5	chr12	8640943	8667826
MFAP5_chr12_8640943_8667826	0/0	t0012	2352	2	2	0	0	0	0	copy fasta	MFAP5	chr12	8640943	8667826
MFAP5_chr12_8640943_8667826	0/0	t0013	2351	1	0	0	1	0	0	copy fasta	MFAP5	chr12	8640943	8667826
MFAP5_chr12_8640943_8667826	0/0	t0014	2351	1	0	0	1	0	0	copy fasta	MFAP5	chr12	8640943	8667826
MFAP5_chr12_8640943_8667826	0/0	t0015	2352	1	0	0	1	0	0	copy fasta	MFAP5	chr12	8640943	8667826
MFAP5_chr12_8640943_8667826	0/0	t0016	2351	1	0	0	0	1	0	copy fasta	MFAP5	chr12	8640943	8667826
MFAP5_chr12_8640943_8667826	0/0	t0017	2352	1	1	0	0	0	0	copy fasta	MFAP5	chr12	8640943	8667826
MFAP5_chr12_8640943_8667826	0/0	t0018	2351	1	0	0	0	0	1	copy fasta	MFAP5	chr12	8640943	8667826
MFF_chr2_227320251_227362833	0/1	t0001	1046	141	21	20	79	5	15	copy fasta	MFF	chr2	227320251	227362833
MFF_chr2_227320251_227362833	0/0	t0002	1046	90	12	17	43	4	14	copy fasta	MFF	chr2	227320251	227362833
MFF_chr2_227320251_227362833	0/0	t0003	1046	45	5	6	28	5	1	copy fasta	MFF	chr2	227320251	227362833
MFF_chr2_227320251_227362833	0/0	t0004	1046	32	7	7	16	0	2	copy fasta	MFF	chr2	227320251	227362833
MFF_chr2_227320251_227362833	0/0	t0005	1046	28	9	1	16	0	2	copy fasta	MFF	chr2	227320251	227362833
MFF_chr2_227320251_227362833	0/0	t0006	1046	13	13	0	0	0	0	copy fasta	MFF	chr2	227320251	227362833
MFF_chr2_227320251_227362833	1/0	t0007	1046	12	11	0	0	0	0	copy fasta	MFF	chr2	227320251	227362833
MFF_chr2_227320251_227362833	0/0	t0008	1046	11	11	0	0	0	0	copy fasta	MFF	chr2	227320251	227362833
MFF_chr2_227320251_227362833	0/0	t0009	1046	7	0	0	7	0	0	copy fasta	MFF	chr2	227320251	227362833
MFF_chr2_227320251_227362833	0/0	t0010	1046	5	3	2	0	0	0	copy fasta	MFF	chr2	227320251	227362833
MFF_chr2_227320251_227362833	0/0	t0011	1046	4	1	0	1	0	2	copy fasta	MFF	chr2	227320251	227362833
MFF_chr2_227320251_227362833	0/0	t0012	1046	4	0	0	4	0	0	copy fasta	MFF	chr2	227320251	227362833
MFF_chr2_227320251_227362833	0/0	t0013	1049	3	0	2	0	0	1	copy fasta	MFF	chr2	227320251	227362833
MFF_chr2_227320251_227362833	0/0	t0014	1046	1	1	0	0	0	0	copy fasta	MFF	chr2	227320251	227362833
MFF_chr2_227320251_227362833	0/0	t0015	1046	1	0	0	1	0	0	copy fasta	MFF	chr2	227320251	227362833