JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MFF_chr2_227320251_227362833	0/0	t0016	1046	1	1	0	0	0	0	copy fasta	MFF	chr2	227320251	227362833
MFF_chr2_227320251_227362833	0/0	t0017	1046	1	0	0	1	0	0	copy fasta	MFF	chr2	227320251	227362833
MFF_chr2_227320251_227362833	0/0	t0018	1046	1	1	0	0	0	0	copy fasta	MFF	chr2	227320251	227362833
MFF_chr2_227320251_227362833	0/0	t0019	1046	1	0	0	0	0	1	copy fasta	MFF	chr2	227320251	227362833
MFF_chr2_227320251_227362833	0/0	t0020	1046	1	0	0	1	0	0	copy fasta	MFF	chr2	227320251	227362833
MFF_chr2_227320251_227362833	0/0	t0021	1046	1	0	0	1	0	0	copy fasta	MFF	chr2	227320251	227362833
MFF_chr2_227320251_227362833	0/0	t0022	1046	1	0	1	0	0	0	copy fasta	MFF	chr2	227320251	227362833
MFF_chr2_227320251_227362833	0/0	t0023	1046	1	0	0	1	0	0	copy fasta	MFF	chr2	227320251	227362833
MFF_chr2_227320251_227362833	0/0	t0024	1046	1	0	0	1	0	0	copy fasta	MFF	chr2	227320251	227362833
MFGE8_chr15_88893683_88918379	1/1	t0001	773	167	32	25	83	5	20	copy fasta	MFGE8	chr15	88893683	88918379
MFGE8_chr15_88893683_88918379	0/0	t0002	773	148	9	34	87	6	12	copy fasta	MFGE8	chr15	88893683	88918379
MFGE8_chr15_88893683_88918379	0/0	t0003	773	47	6	7	20	4	10	copy fasta	MFGE8	chr15	88893683	88918379
MFGE8_chr15_88893683_88918379	0/0	t0004	773	17	6	7	0	1	3	copy fasta	MFGE8	chr15	88893683	88918379
MFGE8_chr15_88893683_88918379	0/0	t0005	773	11	11	0	0	0	0	copy fasta	MFGE8	chr15	88893683	88918379
MFGE8_chr15_88893683_88918379	0/0	t0006	773	11	11	0	0	0	0	copy fasta	MFGE8	chr15	88893683	88918379
MFGE8_chr15_88893683_88918379	0/0	t0007	773	11	11	0	0	0	0	copy fasta	MFGE8	chr15	88893683	88918379
MFGE8_chr15_88893683_88918379	0/0	t0008	773	7	6	1	0	0	0	copy fasta	MFGE8	chr15	88893683	88918379
MFGE8_chr15_88893683_88918379	0/0	t0009	773	4	4	0	0	0	0	copy fasta	MFGE8	chr15	88893683	88918379
MFGE8_chr15_88893683_88918379	0/0	t0010	773	4	0	1	0	1	2	copy fasta	MFGE8	chr15	88893683	88918379
MFGE8_chr15_88893683_88918379	0/0	t0011	773	3	0	0	3	0	0	copy fasta	MFGE8	chr15	88893683	88918379
MFGE8_chr15_88893683_88918379	0/0	t0012	773	1	0	0	1	0	0	copy fasta	MFGE8	chr15	88893683	88918379
MFGE8_chr15_88893683_88918379	0/0	t0013	773	1	0	1	0	0	0	copy fasta	MFGE8	chr15	88893683	88918379
MFGE8_chr15_88893683_88918379	0/0	t0014	773	1	0	0	1	0	0	copy fasta	MFGE8	chr15	88893683	88918379
MFGE8_chr15_88893683_88918379	0/0	t0015	773	1	0	0	0	1	0	copy fasta	MFGE8	chr15	88893683	88918379
MFGE8_chr15_88893683_88918379	0/0	t0016	773	1	0	0	0	0	1	copy fasta	MFGE8	chr15	88893683	88918379
MFGE8_chr15_88893683_88918379	0/0	t0017	773	1	0	0	1	0	0	copy fasta	MFGE8	chr15	88893683	88918379
MFHAS1_chr8_8778354_8898630	0/0	t0001	3242	121	6	31	63	5	16	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	1/0	t0002	3241	26	8	8	9	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0003	3242	20	7	3	7	0	3	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0004	3242	15	0	4	6	0	5	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0005	3241	13	2	0	10	1	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0006	3239	12	3	6	0	2	1	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0007	3239	12	3	4	1	2	2	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0008	3243	10	5	2	0	2	1	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/1	t0009	3242	8	0	4	1	0	2	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0010	3241	6	0	0	6	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0011	3241	5	4	0	1	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0012	3239	5	3	2	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0013	3242	4	4	0	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0014	3243	3	3	0	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0015	3239	3	0	0	0	0	3	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0016	3242	3	0	0	3	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0017	3239	3	3	0	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0018	3242	2	0	0	2	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0019	3243	2	2	0	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0020	3243	2	2	0	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0021	3241	2	2	0	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0022	3242	2	2	0	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0023	3242	2	2	0	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0024	3243	2	2	0	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630