JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MFHAS1_chr8_8778354_8898630	0/0	t0025	3241	2	1	1	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0026	3242	1	0	0	0	0	1	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0027	3241	1	1	0	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0028	3242	1	1	0	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0029	3241	1	1	0	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0030	3241	1	1	0	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0031	3243	1	1	0	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0032	3239	1	0	0	0	0	1	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0033	3243	1	1	0	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0034	3241	1	1	0	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0035	3241	1	1	0	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0036	3241	1	1	0	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0037	3243	1	1	0	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0038	3238	1	0	0	0	0	1	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0039	3242	1	0	0	0	0	1	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0040	3239	1	0	1	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0041	3242	1	0	0	1	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0042	3242	1	1	0	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0043	3242	1	0	0	0	0	1	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0044	3242	1	0	0	1	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0045	3242	1	1	0	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0046	3242	1	1	0	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0047	3242	1	1	0	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0048	3242	1	0	0	1	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0049	3240	1	1	0	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0050	3240	1	0	0	1	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0051	3240	1	0	0	1	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0052	3241	1	0	0	0	0	1	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0053	3242	1	0	0	0	0	1	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0054	3243	1	1	0	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0055	3245	1	1	0	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0056	3241	1	1	0	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0057	3241	1	1	0	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0058	3242	1	0	0	0	0	1	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0059	3242	1	1	0	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0060	3242	1	1	0	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0061	3242	1	1	0	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0062	3240	1	1	0	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0063	3241	1	1	0	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	t0064	3241	1	0	0	0	0	1	copy fasta	MFHAS1	chr8	8778354	8898630
MFN1_chr3_179342709_179399936	1/1	t0001	2987	133	17	21	75	2	16	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0002	2986	51	2	15	29	2	3	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0003	2988	20	3	4	11	0	2	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0004	2988	19	1	3	8	3	4	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0005	2987	16	1	3	7	1	4	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0006	2987	13	13	0	0	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0007	2986	13	0	3	7	1	2	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0008	2986	12	0	1	11	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0009	2979	11	11	0	0	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0010	2988	8	0	0	8	0	0	copy fasta	MFN1	chr3	179342709	179399936