JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MFN1_chr3_179342709_179399936	0/0	t0011	2986	7	0	2	5	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0012	2988	7	5	2	0	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0013	2987	7	1	6	0	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0014	2988	7	0	3	0	2	2	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0015	2988	6	4	2	0	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0016	2987	6	0	2	0	0	4	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0017	2989	6	3	0	0	0	3	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0018	2990	5	3	2	0	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0019	2987	4	4	0	0	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0020	2987	3	2	1	0	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0021	2988	3	3	0	0	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0022	2989	3	0	1	0	0	2	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0023	2988	2	2	0	0	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0024	2987	2	0	0	2	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0025	2984	2	0	2	0	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0026	2986	2	2	0	0	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0027	2987	2	2	0	0	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0028	2987	2	0	0	1	1	0	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0029	2987	2	0	0	2	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0030	2986	2	0	2	0	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0031	2989	2	0	1	1	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0032	2990	2	1	1	0	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0033	2987	2	2	0	0	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0034	2987	2	2	0	0	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0035	2988	1	1	0	0	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0036	2989	1	1	0	0	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0037	2985	1	0	1	0	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0038	2987	1	0	0	0	0	1	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0039	2988	1	1	0	0	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0040	2989	1	1	0	0	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0041	2986	1	1	0	0	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0042	2987	1	1	0	0	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0043	2988	1	0	0	0	0	1	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0044	2986	1	0	0	1	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0045	2979	1	1	0	0	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0046	2988	1	0	0	1	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0047	2987	1	0	0	1	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0048	2988	1	0	0	1	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0049	2977	1	1	0	0	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0050	2987	1	0	0	1	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0051	2987	1	1	0	0	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	t0052	2988	1	1	0	0	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN2_chr1_11975444_12018508	0/1	t0001	2134	129	27	28	50	6	17	copy fasta	MFN2	chr1	11975444	12018508
MFN2_chr1_11975444_12018508	1/0	t0002	2134	96	7	24	51	5	8	copy fasta	MFN2	chr1	11975444	12018508
MFN2_chr1_11975444_12018508	0/0	t0003	2134	59	0	5	41	2	11	copy fasta	MFN2	chr1	11975444	12018508
MFN2_chr1_11975444_12018508	0/0	t0004	2134	39	28	1	9	0	1	copy fasta	MFN2	chr1	11975444	12018508
MFN2_chr1_11975444_12018508	0/0	t0005	2134	16	1	3	7	0	5	copy fasta	MFN2	chr1	11975444	12018508
MFN2_chr1_11975444_12018508	0/0	t0006	2134	7	6	1	0	0	0	copy fasta	MFN2	chr1	11975444	12018508
MFN2_chr1_11975444_12018508	0/0	t0007	2135	6	5	1	0	0	0	copy fasta	MFN2	chr1	11975444	12018508
MFN2_chr1_11975444_12018508	0/0	t0008	2134	6	0	0	6	0	0	copy fasta	MFN2	chr1	11975444	12018508