JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MFN2_chr1_11975444_12018508	0/0	t0009	2134	4	0	0	4	0	0	copy fasta	MFN2	chr1	11975444	12018508
MFN2_chr1_11975444_12018508	0/0	t0010	2134	3	3	0	0	0	0	copy fasta	MFN2	chr1	11975444	12018508
MFN2_chr1_11975444_12018508	0/0	t0011	2133	3	0	0	3	0	0	copy fasta	MFN2	chr1	11975444	12018508
MFN2_chr1_11975444_12018508	0/0	t0012	2134	3	3	0	0	0	0	copy fasta	MFN2	chr1	11975444	12018508
MFN2_chr1_11975444_12018508	0/0	t0013	2134	3	3	0	0	0	0	copy fasta	MFN2	chr1	11975444	12018508
MFN2_chr1_11975444_12018508	0/0	t0014	2134	3	3	0	0	0	0	copy fasta	MFN2	chr1	11975444	12018508
MFN2_chr1_11975444_12018508	0/0	t0015	2134	3	3	0	0	0	0	copy fasta	MFN2	chr1	11975444	12018508
MFN2_chr1_11975444_12018508	0/0	t0016	2134	2	0	0	0	0	2	copy fasta	MFN2	chr1	11975444	12018508
MFN2_chr1_11975444_12018508	0/0	t0017	2135	2	1	1	0	0	0	copy fasta	MFN2	chr1	11975444	12018508
MFN2_chr1_11975444_12018508	0/0	t0018	2134	1	0	0	0	0	1	copy fasta	MFN2	chr1	11975444	12018508
MFN2_chr1_11975444_12018508	0/0	t0019	2134	1	0	0	0	0	1	copy fasta	MFN2	chr1	11975444	12018508
MFN2_chr1_11975444_12018508	0/0	t0020	2133	1	0	0	1	0	0	copy fasta	MFN2	chr1	11975444	12018508
MFN2_chr1_11975444_12018508	0/0	t0021	2134	1	0	0	1	0	0	copy fasta	MFN2	chr1	11975444	12018508
MFN2_chr1_11975444_12018508	0/0	t0022	2134	1	1	0	0	0	0	copy fasta	MFN2	chr1	11975444	12018508
MFN2_chr1_11975444_12018508	0/0	t0023	2135	1	0	0	1	0	0	copy fasta	MFN2	chr1	11975444	12018508
MFN2_chr1_11975444_12018508	0/0	t0024	2134	1	0	0	0	1	0	copy fasta	MFN2	chr1	11975444	12018508
MFN2_chr1_11975444_12018508	0/0	t0025	2134	1	1	0	0	0	0	copy fasta	MFN2	chr1	11975444	12018508
MFN2_chr1_11975444_12018508	0/0	t0026	2134	1	1	0	0	0	0	copy fasta	MFN2	chr1	11975444	12018508
MFN2_chr1_11975444_12018508	0/0	t0027	2134	1	1	0	0	0	0	copy fasta	MFN2	chr1	11975444	12018508
MFNG_chr22_37464063_37491384	1/1	t0001	1108	281	75	49	109	7	39	copy fasta	MFNG	chr22	37464063	37491384
MFNG_chr22_37464063_37491384	0/0	t0002	1108	6	5	1	0	0	0	copy fasta	MFNG	chr22	37464063	37491384
MFNG_chr22_37464063_37491384	0/0	t0003	443	1	0	0	1	0	0	copy fasta	MFNG	chr22	37464063	37491384
MFNG_chr22_37464063_37491384	0/0	t0004	1108	1	0	0	0	1	0	copy fasta	MFNG	chr22	37464063	37491384
MFNG_chr22_37464063_37491384	0/0	t0005	1108	1	1	0	0	0	0	copy fasta	MFNG	chr22	37464063	37491384
MFNG_chr22_37464063_37491384	0/0	t0006	1108	1	1	0	0	0	0	copy fasta	MFNG	chr22	37464063	37491384
MFNG_chr22_37464063_37491384	0/0	t0007	1108	1	0	0	0	0	1	copy fasta	MFNG	chr22	37464063	37491384
MFRP_chr11_119333942_119351705	0/1	t0001	2210	172	27	34	79	7	24	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	1/0	t0002	2210	71	23	25	18	1	3	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	t0003	2210	28	12	5	7	2	2	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	t0004	2210	11	8	0	2	0	1	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	t0005	2210	8	4	4	0	0	0	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	t0006	2210	6	4	2	0	0	0	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	t0007	2210	3	0	1	2	0	0	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	t0008	2210	2	0	0	0	0	2	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	t0009	2210	2	0	0	0	0	2	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	t0010	2210	2	0	0	0	0	2	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	t0011	2182	1	0	0	0	0	1	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	t0012	2210	1	1	0	0	0	0	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	t0013	2210	1	1	0	0	0	0	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	t0014	2210	1	0	0	1	0	0	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	t0015	2210	1	0	1	0	0	0	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	t0016	2210	1	1	0	0	0	0	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	t0017	2210	1	1	0	0	0	0	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	t0018	2210	1	0	0	1	0	0	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	t0019	2210	1	0	0	1	0	0	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	t0020	2210	1	0	0	1	0	0	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	t0021	2210	1	0	0	0	0	1	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	t0022	2079	1	0	0	1	0	0	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	t0023	2210	1	0	0	1	0	0	copy fasta	MFRP	chr11	119333942	119351705
MFSD10_chr4_2925567_2939825	1/1	t0001	350	414	89	81	179	18	45	copy fasta	MFSD10	chr4	2925567	2939825