Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARHGAP27_chr17_45388908_45437870	0/0	t0021	1952	1	1	0	0	0	0	copy fasta	ARHGAP27	chr17	45388908	45437870
ARHGAP27_chr17_45388908_45437870	0/0	t0022	1952	1	1	0	0	0	0	copy fasta	ARHGAP27	chr17	45388908	45437870
ARHGAP27_chr17_45388908_45437870	0/0	t0023	1952	1	0	0	1	0	0	copy fasta	ARHGAP27	chr17	45388908	45437870
ARHGAP27_chr17_45388908_45437870	0/0	t0024	1952	1	0	0	1	0	0	copy fasta	ARHGAP27	chr17	45388908	45437870
ARHGAP27_chr17_45388908_45437870	0/0	t0025	1952	1	0	1	0	0	0	copy fasta	ARHGAP27	chr17	45388908	45437870
ARHGAP27_chr17_45388908_45437870	0/0	t0026	1952	1	0	0	0	0	1	copy fasta	ARHGAP27	chr17	45388908	45437870
ARHGAP28_chr18_6724716_6920716	0/1	t0001	3665	111	21	14	56	7	12	copy fasta	ARHGAP28	chr18	6724716	6920716
ARHGAP28_chr18_6724716_6920716	1/0	t0002	3669	56	7	6	31	1	10	copy fasta	ARHGAP28	chr18	6724716	6920716
ARHGAP28_chr18_6724716_6920716	0/0	t0003	3665	45	22	10	6	2	5	copy fasta	ARHGAP28	chr18	6724716	6920716
ARHGAP28_chr18_6724716_6920716	0/0	t0004	3669	4	4	0	0	0	0	copy fasta	ARHGAP28	chr18	6724716	6920716
ARHGAP28_chr18_6724716_6920716	0/0	t0005	3666	4	4	0	0	0	0	copy fasta	ARHGAP28	chr18	6724716	6920716
ARHGAP28_chr18_6724716_6920716	0/0	t0006	3664	3	3	0	0	0	0	copy fasta	ARHGAP28	chr18	6724716	6920716
ARHGAP28_chr18_6724716_6920716	0/0	t0007	3665	3	3	0	0	0	0	copy fasta	ARHGAP28	chr18	6724716	6920716
ARHGAP28_chr18_6724716_6920716	0/0	t0008	3665	3	3	0	0	0	0	copy fasta	ARHGAP28	chr18	6724716	6920716
ARHGAP28_chr18_6724716_6920716	0/0	t0009	3665	3	3	0	0	0	0	copy fasta	ARHGAP28	chr18	6724716	6920716
ARHGAP28_chr18_6724716_6920716	0/0	t0010	3669	2	0	0	2	0	0	copy fasta	ARHGAP28	chr18	6724716	6920716
ARHGAP28_chr18_6724716_6920716	0/0	t0011	3665	2	0	0	0	0	2	copy fasta	ARHGAP28	chr18	6724716	6920716
ARHGAP28_chr18_6724716_6920716	0/0	t0012	3669	1	1	0	0	0	0	copy fasta	ARHGAP28	chr18	6724716	6920716
ARHGAP28_chr18_6724716_6920716	0/0	t0013	3669	1	0	0	1	0	0	copy fasta	ARHGAP28	chr18	6724716	6920716
ARHGAP28_chr18_6724716_6920716	0/0	t0014	3665	1	1	0	0	0	0	copy fasta	ARHGAP28	chr18	6724716	6920716
ARHGAP28_chr18_6724716_6920716	0/0	t0015	3665	1	0	1	0	0	0	copy fasta	ARHGAP28	chr18	6724716	6920716
ARHGAP28_chr18_6724716_6920716	0/0	t0016	3665	1	0	1	0	0	0	copy fasta	ARHGAP28	chr18	6724716	6920716
ARHGAP28_chr18_6724716_6920716	0/0	t0017	3665	1	0	0	0	0	1	copy fasta	ARHGAP28	chr18	6724716	6920716
ARHGAP28_chr18_6724716_6920716	0/0	t0018	3665	1	1	0	0	0	0	copy fasta	ARHGAP28	chr18	6724716	6920716
ARHGAP28_chr18_6724716_6920716	0/0	t0019	3665	1	1	0	0	0	0	copy fasta	ARHGAP28	chr18	6724716	6920716
ARHGAP28_chr18_6724716_6920716	0/0	t0020	3665	1	1	0	0	0	0	copy fasta	ARHGAP28	chr18	6724716	6920716
ARHGAP28_chr18_6724716_6920716	0/0	t0021	3665	1	1	0	0	0	0	copy fasta	ARHGAP28	chr18	6724716	6920716
ARHGAP28_chr18_6724716_6920716	0/0	t0022	3669	1	1	0	0	0	0	copy fasta	ARHGAP28	chr18	6724716	6920716
ARHGAP28_chr18_6724716_6920716	0/0	t0023	3666	1	1	0	0	0	0	copy fasta	ARHGAP28	chr18	6724716	6920716
ARHGAP29_chr1_94163905_94242584	0/0	t0001	5169	74	4	17	40	4	9	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	t0002	5173	54	7	12	29	2	4	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/1	t0003	5169	46	10	8	20	4	3	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	t0004	5171	36	11	2	23	0	0	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	t0005	5169	23	1	1	18	1	2	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	t0006	5175	16	2	4	8	2	0	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	t0007	5171	15	4	5	0	0	6	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	1/0	t0008	5167	9	8	0	0	0	0	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	t0009	5171	8	0	4	3	0	1	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	t0010	5149	7	7	0	0	0	0	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	t0011	5173	6	4	0	2	0	0	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	t0012	5171	5	5	0	0	0	0	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	t0013	5169	4	0	0	4	0	0	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	t0014	5171	4	0	2	1	1	0	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	t0015	5167	4	4	0	0	0	0	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	t0016	5169	4	0	1	0	2	1	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	t0017	5169	3	0	1	2	0	0	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	t0018	5167	3	3	0	0	0	0	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	t0019	5171	3	1	2	0	0	0	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	t0020	5173	3	0	0	3	0	0	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	t0021	5177	2	1	0	1	0	0	copy fasta	ARHGAP29	chr1	94163905	94242584