JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MFSD10_chr4_2925567_2939825	0/0	t0002	355	3	3	0	0	0	0	copy fasta	MFSD10	chr4	2925567	2939825
MFSD10_chr4_2925567_2939825	0/0	t0003	350	2	2	0	0	0	0	copy fasta	MFSD10	chr4	2925567	2939825
MFSD10_chr4_2925567_2939825	0/0	t0004	350	1	0	1	0	0	0	copy fasta	MFSD10	chr4	2925567	2939825
MFSD10_chr4_2925567_2939825	0/0	t0005	350	1	0	0	1	0	0	copy fasta	MFSD10	chr4	2925567	2939825
MFSD10_chr4_2925567_2939825	0/0	t0006	350	1	0	0	0	0	1	copy fasta	MFSD10	chr4	2925567	2939825
MFSD11_chr17_76733119_76784341	0/1	t0001	1224	177	48	39	62	11	16	copy fasta	MFSD11	chr17	76733119	76784341
MFSD11_chr17_76733119_76784341	0/0	t0002	1224	112	3	11	82	3	13	copy fasta	MFSD11	chr17	76733119	76784341
MFSD11_chr17_76733119_76784341	0/0	t0003	1224	19	14	1	4	0	0	copy fasta	MFSD11	chr17	76733119	76784341
MFSD11_chr17_76733119_76784341	0/0	t0004	1225	8	7	1	0	0	0	copy fasta	MFSD11	chr17	76733119	76784341
MFSD11_chr17_76733119_76784341	0/0	t0005	1225	6	5	1	0	0	0	copy fasta	MFSD11	chr17	76733119	76784341
MFSD11_chr17_76733119_76784341	0/0	t0006	1225	5	5	0	0	0	0	copy fasta	MFSD11	chr17	76733119	76784341
MFSD11_chr17_76733119_76784341	0/0	t0007	1223	4	0	1	3	0	0	copy fasta	MFSD11	chr17	76733119	76784341
MFSD11_chr17_76733119_76784341	0/0	t0008	1225	3	0	1	2	0	0	copy fasta	MFSD11	chr17	76733119	76784341
MFSD11_chr17_76733119_76784341	0/0	t0009	1223	3	1	0	2	0	0	copy fasta	MFSD11	chr17	76733119	76784341
MFSD11_chr17_76733119_76784341	0/0	t0010	1225	2	1	1	0	0	0	copy fasta	MFSD11	chr17	76733119	76784341
MFSD11_chr17_76733119_76784341	0/0	t0011	1224	2	0	0	0	0	2	copy fasta	MFSD11	chr17	76733119	76784341
MFSD11_chr17_76733119_76784341	0/0	t0012	1224	1	1	0	0	0	0	copy fasta	MFSD11	chr17	76733119	76784341
MFSD11_chr17_76733119_76784341	0/0	t0013	1224	1	0	1	0	0	0	copy fasta	MFSD11	chr17	76733119	76784341
MFSD11_chr17_76733119_76784341	0/0	t0014	1224	1	0	1	0	0	0	copy fasta	MFSD11	chr17	76733119	76784341
MFSD11_chr17_76733119_76784341	0/0	t0015	1224	1	0	0	0	0	1	copy fasta	MFSD11	chr17	76733119	76784341
MFSD11_chr17_76733119_76784341	0/0	t0016	1224	1	0	0	1	0	0	copy fasta	MFSD11	chr17	76733119	76784341
MFSD11_chr17_76733119_76784341	0/0	t0017	1224	1	1	0	0	0	0	copy fasta	MFSD11	chr17	76733119	76784341
MFSD11_chr17_76733119_76784341	1/0	t0018	1224	1	0	0	0	0	0	copy fasta	MFSD11	chr17	76733119	76784341
MFSD12_chr19_3539199_3562586	1/1	t0001	695	360	56	81	169	13	39	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	t0002	695	29	29	0	0	0	0	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	t0003	695	10	3	1	0	0	6	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	t0004	693	5	1	2	0	1	1	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	t0005	695	3	0	0	3	0	0	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	t0006	695	3	3	0	0	0	0	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	t0007	695	3	0	2	0	0	1	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	t0008	695	2	2	0	0	0	0	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	t0009	695	2	0	0	1	1	0	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	t0010	695	1	0	0	1	0	0	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	t0011	695	1	1	0	0	0	0	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	t0012	695	1	1	0	0	0	0	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	t0013	718	1	0	0	1	0	0	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	t0014	695	1	0	0	1	0	0	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	t0015	695	1	1	0	0	0	0	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	t0016	695	1	1	0	0	0	0	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	t0017	693	1	0	0	0	1	0	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	t0018	695	1	0	0	0	0	1	copy fasta	MFSD12	chr19	3539199	3562586
MFSD13A_chr10_102456395_102482045	0/0	t0001	1299	101	2	12	72	5	10	copy fasta	MFSD13A	chr10	102456395	102482045
MFSD13A_chr10_102456395_102482045	0/0	t0002	1303	87	4	16	53	1	13	copy fasta	MFSD13A	chr10	102456395	102482045
MFSD13A_chr10_102456395_102482045	0/1	t0003	1299	70	27	14	23	3	2	copy fasta	MFSD13A	chr10	102456395	102482045
MFSD13A_chr10_102456395_102482045	0/0	t0004	1300	70	16	18	19	2	15	copy fasta	MFSD13A	chr10	102456395	102482045
MFSD13A_chr10_102456395_102482045	0/0	t0005	1299	19	19	0	0	0	0	copy fasta	MFSD13A	chr10	102456395	102482045
MFSD13A_chr10_102456395_102482045	0/0	t0006	1300	11	4	2	3	0	2	copy fasta	MFSD13A	chr10	102456395	102482045
MFSD13A_chr10_102456395_102482045	0/0	t0007	1304	8	0	0	8	0	0	copy fasta	MFSD13A	chr10	102456395	102482045
MFSD13A_chr10_102456395_102482045	0/0	t0008	1301	8	0	3	2	0	3	copy fasta	MFSD13A	chr10	102456395	102482045
MFSD13A_chr10_102456395_102482045	0/0	t0009	1304	7	0	1	5	0	1	copy fasta	MFSD13A	chr10	102456395	102482045