JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MFSD13A_chr10_102456395_102482045	0/0	t0010	1302	6	2	3	1	0	0	copy fasta	MFSD13A	chr10	102456395	102482045
MFSD13A_chr10_102456395_102482045	0/0	t0011	1299	5	5	0	0	0	0	copy fasta	MFSD13A	chr10	102456395	102482045
MFSD13A_chr10_102456395_102482045	0/0	t0012	1303	5	4	1	0	0	0	copy fasta	MFSD13A	chr10	102456395	102482045
MFSD13A_chr10_102456395_102482045	0/0	t0013	1300	4	2	2	0	0	0	copy fasta	MFSD13A	chr10	102456395	102482045
MFSD13A_chr10_102456395_102482045	0/0	t0014	1305	2	0	0	2	0	0	copy fasta	MFSD13A	chr10	102456395	102482045
MFSD13A_chr10_102456395_102482045	0/0	t0015	1299	2	0	0	0	2	0	copy fasta	MFSD13A	chr10	102456395	102482045
MFSD13A_chr10_102456395_102482045	0/0	t0016	1299	2	0	0	2	0	0	copy fasta	MFSD13A	chr10	102456395	102482045
MFSD13A_chr10_102456395_102482045	0/0	t0017	1303	2	2	0	0	0	0	copy fasta	MFSD13A	chr10	102456395	102482045
MFSD13A_chr10_102456395_102482045	0/0	t0018	1303	1	0	0	1	0	0	copy fasta	MFSD13A	chr10	102456395	102482045
MFSD13A_chr10_102456395_102482045	0/0	t0019	1303	1	0	0	1	0	0	copy fasta	MFSD13A	chr10	102456395	102482045
MFSD13A_chr10_102456395_102482045	0/0	t0020	1303	1	0	1	0	0	0	copy fasta	MFSD13A	chr10	102456395	102482045
MFSD13A_chr10_102456395_102482045	0/0	t0021	1303	1	0	0	0	1	0	copy fasta	MFSD13A	chr10	102456395	102482045
MFSD13A_chr10_102456395_102482045	1/0	t0022	1299	1	0	0	0	0	0	copy fasta	MFSD13A	chr10	102456395	102482045
MFSD13A_chr10_102456395_102482045	0/0	t0023	1300	1	0	0	1	0	0	copy fasta	MFSD13A	chr10	102456395	102482045
MFSD13A_chr10_102456395_102482045	0/0	t0024	1299	1	0	0	0	0	1	copy fasta	MFSD13A	chr10	102456395	102482045
MFSD13A_chr10_102456395_102482045	0/0	t0025	1299	1	1	0	0	0	0	copy fasta	MFSD13A	chr10	102456395	102482045
MFSD13A_chr10_102456395_102482045	0/0	t0026	1299	1	0	0	0	0	1	copy fasta	MFSD13A	chr10	102456395	102482045
MFSD13A_chr10_102456395_102482045	0/0	t0027	1299	1	0	0	1	0	0	copy fasta	MFSD13A	chr10	102456395	102482045
MFSD13A_chr10_102456395_102482045	0/0	t0028	1300	1	0	1	0	0	0	copy fasta	MFSD13A	chr10	102456395	102482045
MFSD13A_chr10_102456395_102482045	0/0	t0029	1300	1	1	0	0	0	0	copy fasta	MFSD13A	chr10	102456395	102482045
MFSD13A_chr10_102456395_102482045	0/0	t0030	1301	1	0	0	1	0	0	copy fasta	MFSD13A	chr10	102456395	102482045
MFSD13A_chr10_102456395_102482045	0/0	t0031	1305	1	1	0	0	0	0	copy fasta	MFSD13A	chr10	102456395	102482045
MFSD13A_chr10_102456395_102482045	0/0	t0032	1301	1	0	0	1	0	0	copy fasta	MFSD13A	chr10	102456395	102482045
MFSD14A_chr1_100033095_100088377	1/1	t0001	1307	134	57	23	34	6	12	copy fasta	MFSD14A	chr1	100033095	100088377
MFSD14A_chr1_100033095_100088377	0/0	t0002	1307	70	2	22	36	3	7	copy fasta	MFSD14A	chr1	100033095	100088377
MFSD14A_chr1_100033095_100088377	0/0	t0003	1307	30	8	5	11	1	5	copy fasta	MFSD14A	chr1	100033095	100088377
MFSD14A_chr1_100033095_100088377	0/0	t0004	1307	3	3	0	0	0	0	copy fasta	MFSD14A	chr1	100033095	100088377
MFSD14A_chr1_100033095_100088377	0/0	t0005	1307	3	3	0	0	0	0	copy fasta	MFSD14A	chr1	100033095	100088377
MFSD14A_chr1_100033095_100088377	0/0	t0006	1307	1	0	0	1	0	0	copy fasta	MFSD14A	chr1	100033095	100088377
MFSD14A_chr1_100033095_100088377	0/0	t0007	1307	1	1	0	0	0	0	copy fasta	MFSD14A	chr1	100033095	100088377
MFSD14B_chr9_94369569_94466042	0/0	t0001	1880	111	15	30	49	4	13	copy fasta	MFSD14B	chr9	94369569	94466042
MFSD14B_chr9_94369569_94466042	0/0	t0002	1881	64	18	5	36	4	1	copy fasta	MFSD14B	chr9	94369569	94466042
MFSD14B_chr9_94369569_94466042	1/0	t0003	1882	64	3	12	33	5	10	copy fasta	MFSD14B	chr9	94369569	94466042
MFSD14B_chr9_94369569_94466042	0/0	t0004	1881	36	6	6	16	0	8	copy fasta	MFSD14B	chr9	94369569	94466042
MFSD14B_chr9_94369569_94466042	0/0	t0005	1877	13	8	5	0	0	0	copy fasta	MFSD14B	chr9	94369569	94466042
MFSD14B_chr9_94369569_94466042	0/0	t0006	1881	11	10	1	0	0	0	copy fasta	MFSD14B	chr9	94369569	94466042
MFSD14B_chr9_94369569_94466042	0/0	t0007	1880	11	7	2	1	0	1	copy fasta	MFSD14B	chr9	94369569	94466042
MFSD14B_chr9_94369569_94466042	0/0	t0008	1880	10	9	1	0	0	0	copy fasta	MFSD14B	chr9	94369569	94466042
MFSD14B_chr9_94369569_94466042	0/0	t0009	1880	7	0	3	0	1	3	copy fasta	MFSD14B	chr9	94369569	94466042
MFSD14B_chr9_94369569_94466042	0/1	t0010	1882	4	0	2	0	0	1	copy fasta	MFSD14B	chr9	94369569	94466042
MFSD14B_chr9_94369569_94466042	0/0	t0011	1881	3	0	1	1	1	0	copy fasta	MFSD14B	chr9	94369569	94466042
MFSD14B_chr9_94369569_94466042	0/0	t0012	1882	3	0	0	3	0	0	copy fasta	MFSD14B	chr9	94369569	94466042
MFSD14B_chr9_94369569_94466042	0/0	t0013	1879	2	0	0	2	0	0	copy fasta	MFSD14B	chr9	94369569	94466042
MFSD14B_chr9_94369569_94466042	0/0	t0014	1879	2	0	0	1	1	0	copy fasta	MFSD14B	chr9	94369569	94466042
MFSD14B_chr9_94369569_94466042	0/0	t0015	1869	1	0	0	0	0	1	copy fasta	MFSD14B	chr9	94369569	94466042
MFSD14B_chr9_94369569_94466042	0/0	t0016	1880	1	1	0	0	0	0	copy fasta	MFSD14B	chr9	94369569	94466042
MFSD14B_chr9_94369569_94466042	0/0	t0017	1879	1	1	0	0	0	0	copy fasta	MFSD14B	chr9	94369569	94466042
MFSD14B_chr9_94369569_94466042	0/0	t0018	1881	1	0	0	0	0	1	copy fasta	MFSD14B	chr9	94369569	94466042
MFSD14B_chr9_94369569_94466042	0/0	t0019	1880	1	0	1	0	0	0	copy fasta	MFSD14B	chr9	94369569	94466042
MFSD14B_chr9_94369569_94466042	0/0	t0020	1881	1	0	1	0	0	0	copy fasta	MFSD14B	chr9	94369569	94466042