JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MFSD14B_chr9_94369569_94466042	0/0	t0021	1881	1	0	0	0	0	1	copy fasta	MFSD14B	chr9	94369569	94466042
MFSD14B_chr9_94369569_94466042	0/0	t0022	1882	1	0	0	1	0	0	copy fasta	MFSD14B	chr9	94369569	94466042
MFSD14B_chr9_94369569_94466042	0/0	t0023	1880	1	0	0	1	0	0	copy fasta	MFSD14B	chr9	94369569	94466042
MFSD1_chr3_158797054_158834716	1/0	t0001	834	312	73	63	124	13	38	copy fasta	MFSD1	chr3	158797054	158834716
MFSD1_chr3_158797054_158834716	0/1	t0002	835	59	4	9	42	1	2	copy fasta	MFSD1	chr3	158797054	158834716
MFSD1_chr3_158797054_158834716	0/0	t0003	834	16	14	2	0	0	0	copy fasta	MFSD1	chr3	158797054	158834716
MFSD1_chr3_158797054_158834716	0/0	t0004	834	4	0	0	4	0	0	copy fasta	MFSD1	chr3	158797054	158834716
MFSD1_chr3_158797054_158834716	0/0	t0005	834	3	3	0	0	0	0	copy fasta	MFSD1	chr3	158797054	158834716
MFSD1_chr3_158797054_158834716	0/0	t0006	834	1	0	0	1	0	0	copy fasta	MFSD1	chr3	158797054	158834716
MFSD1_chr3_158797054_158834716	0/0	t0007	824	1	0	0	0	0	1	copy fasta	MFSD1	chr3	158797054	158834716
MFSD1_chr3_158797054_158834716	0/0	t0008	834	1	0	0	0	0	1	copy fasta	MFSD1	chr3	158797054	158834716
MFSD1_chr3_158797054_158834716	0/0	t0009	834	1	0	0	1	0	0	copy fasta	MFSD1	chr3	158797054	158834716
MFSD1_chr3_158797054_158834716	0/0	t0010	834	1	0	1	0	0	0	copy fasta	MFSD1	chr3	158797054	158834716
MFSD1_chr3_158797054_158834716	0/0	t0011	834	1	0	1	0	0	0	copy fasta	MFSD1	chr3	158797054	158834716
MFSD1_chr3_158797054_158834716	0/0	t0012	1230	1	0	0	1	0	0	copy fasta	MFSD1	chr3	158797054	158834716
MFSD1_chr3_158797054_158834716	0/0	t0013	835	1	0	0	1	0	0	copy fasta	MFSD1	chr3	158797054	158834716
MFSD2A_chr1_39950145_39974956	0/1	t0001	536	281	72	58	94	15	41	copy fasta	MFSD2A	chr1	39950145	39974956
MFSD2A_chr1_39950145_39974956	1/0	t0002	537	107	19	5	74	1	7	copy fasta	MFSD2A	chr1	39950145	39974956
MFSD2A_chr1_39950145_39974956	0/0	t0003	536	4	3	1	0	0	0	copy fasta	MFSD2A	chr1	39950145	39974956
MFSD2B_chr2_24005085_24031775	1/1	t0001	1332	266	79	58	81	11	35	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD2B_chr2_24005085_24031775	0/0	t0002	1332	20	0	6	6	4	4	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD2B_chr2_24005085_24031775	0/0	t0003	1332	7	3	2	0	0	2	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD2B_chr2_24005085_24031775	0/0	t0004	1332	6	0	2	1	2	1	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD2B_chr2_24005085_24031775	0/0	t0005	1332	3	0	0	3	0	0	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD2B_chr2_24005085_24031775	0/0	t0006	1332	2	2	0	0	0	0	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD2B_chr2_24005085_24031775	0/0	t0007	1332	1	1	0	0	0	0	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD2B_chr2_24005085_24031775	0/0	t0008	1332	1	1	0	0	0	0	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD2B_chr2_24005085_24031775	0/0	t0009	1332	1	0	1	0	0	0	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD2B_chr2_24005085_24031775	0/0	t0010	1332	1	1	0	0	0	0	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD2B_chr2_24005085_24031775	0/0	t0011	1332	1	0	0	1	0	0	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD2B_chr2_24005085_24031775	0/0	t0012	1332	1	0	1	0	0	0	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD2B_chr2_24005085_24031775	0/0	t0013	1332	1	0	0	1	0	0	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD2B_chr2_24005085_24031775	0/0	t0014	1332	1	1	0	0	0	0	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD2B_chr2_24005085_24031775	0/0	t0015	1332	1	0	0	1	0	0	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD2B_chr2_24005085_24031775	0/0	t0016	1332	1	1	0	0	0	0	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD2B_chr2_24005085_24031775	0/0	t0017	1332	1	1	0	0	0	0	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD2B_chr2_24005085_24031775	0/0	t0018	1332	1	0	0	0	1	0	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD3_chr8_144504070_144516213	1/1	t0001	314	382	83	73	167	16	41	copy fasta	MFSD3	chr8	144504070	144516213
MFSD3_chr8_144504070_144516213	0/0	t0002	314	11	11	0	0	0	0	copy fasta	MFSD3	chr8	144504070	144516213
MFSD3_chr8_144504070_144516213	0/0	t0003	314	1	0	0	1	0	0	copy fasta	MFSD3	chr8	144504070	144516213
MFSD3_chr8_144504070_144516213	0/0	t0004	314	1	1	0	0	0	0	copy fasta	MFSD3	chr8	144504070	144516213
MFSD3_chr8_144504070_144516213	0/0	t0005	314	1	0	1	0	0	0	copy fasta	MFSD3	chr8	144504070	144516213
MFSD3_chr8_144504070_144516213	0/0	t0006	314	1	0	0	0	0	1	copy fasta	MFSD3	chr8	144504070	144516213
MFSD3_chr8_144504070_144516213	0/0	t0007	314	1	1	0	0	0	0	copy fasta	MFSD3	chr8	144504070	144516213
MFSD3_chr8_144504070_144516213	0/0	t0008	314	1	1	0	0	0	0	copy fasta	MFSD3	chr8	144504070	144516213
MFSD3_chr8_144504070_144516213	0/0	t0009	305	1	1	0	0	0	0	copy fasta	MFSD3	chr8	144504070	144516213
MFSD4A_chr1_205564014_205607918	0/0	t0001	2514	107	16	23	55	1	12	copy fasta	MFSD4A	chr1	205564014	205607918
MFSD4A_chr1_205564014_205607918	1/0	t0002	2514	91	53	21	8	1	7	copy fasta	MFSD4A	chr1	205564014	205607918
MFSD4A_chr1_205564014_205607918	0/1	t0003	2514	72	5	18	32	7	9	copy fasta	MFSD4A	chr1	205564014	205607918
MFSD4A_chr1_205564014_205607918	0/0	t0004	2514	66	0	12	42	3	9	copy fasta	MFSD4A	chr1	205564014	205607918