JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MFSD4A_chr1_205564014_205607918	0/0	t0005	2514	8	0	1	0	0	7	copy fasta	MFSD4A	chr1	205564014	205607918
MFSD4A_chr1_205564014_205607918	0/0	t0006	2514	6	6	0	0	0	0	copy fasta	MFSD4A	chr1	205564014	205607918
MFSD4A_chr1_205564014_205607918	0/0	t0007	2508	4	4	0	0	0	0	copy fasta	MFSD4A	chr1	205564014	205607918
MFSD4A_chr1_205564014_205607918	0/0	t0008	2514	2	2	0	0	0	0	copy fasta	MFSD4A	chr1	205564014	205607918
MFSD4A_chr1_205564014_205607918	0/0	t0009	2514	2	2	0	0	0	0	copy fasta	MFSD4A	chr1	205564014	205607918
MFSD4A_chr1_205564014_205607918	0/0	t0010	2514	2	1	1	0	0	0	copy fasta	MFSD4A	chr1	205564014	205607918
MFSD4A_chr1_205564014_205607918	0/0	t0011	2514	2	2	0	0	0	0	copy fasta	MFSD4A	chr1	205564014	205607918
MFSD4A_chr1_205564014_205607918	0/0	t0012	2514	2	1	1	0	0	0	copy fasta	MFSD4A	chr1	205564014	205607918
MFSD4A_chr1_205564014_205607918	0/0	t0013	2514	2	0	0	0	1	1	copy fasta	MFSD4A	chr1	205564014	205607918
MFSD4A_chr1_205564014_205607918	0/0	t0014	2514	1	0	0	1	0	0	copy fasta	MFSD4A	chr1	205564014	205607918
MFSD4A_chr1_205564014_205607918	0/0	t0015	2514	1	0	1	0	0	0	copy fasta	MFSD4A	chr1	205564014	205607918
MFSD4A_chr1_205564014_205607918	0/0	t0016	2514	1	0	1	0	0	0	copy fasta	MFSD4A	chr1	205564014	205607918
MFSD4A_chr1_205564014_205607918	0/0	t0017	2514	1	0	1	0	0	0	copy fasta	MFSD4A	chr1	205564014	205607918
MFSD4A_chr1_205564014_205607918	0/0	t0018	2514	1	0	0	1	0	0	copy fasta	MFSD4A	chr1	205564014	205607918
MFSD4A_chr1_205564014_205607918	0/0	t0019	2514	1	0	0	0	1	0	copy fasta	MFSD4A	chr1	205564014	205607918
MFSD4A_chr1_205564014_205607918	0/0	t0020	2514	1	0	0	0	1	0	copy fasta	MFSD4A	chr1	205564014	205607918
MFSD4A_chr1_205564014_205607918	0/0	t0021	2514	1	1	0	0	0	0	copy fasta	MFSD4A	chr1	205564014	205607918
MFSD4A_chr1_205564014_205607918	0/0	t0022	2514	1	0	0	1	0	0	copy fasta	MFSD4A	chr1	205564014	205607918
MFSD4A_chr1_205564014_205607918	0/0	t0023	2514	1	0	0	0	0	1	copy fasta	MFSD4A	chr1	205564014	205607918
MFSD4A_chr1_205564014_205607918	0/0	t0024	2514	1	1	0	0	0	0	copy fasta	MFSD4A	chr1	205564014	205607918
MFSD4A_chr1_205564014_205607918	0/0	t0025	2514	1	0	0	0	1	0	copy fasta	MFSD4A	chr1	205564014	205607918
MFSD4B_chr6_111254339_111285005	0/0	t0001	13253	28	3	10	12	2	1	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	1/0	t0002	13249	26	2	0	16	2	5	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0003	13251	15	0	0	14	0	1	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0004	13252	14	2	6	3	1	2	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0005	13250	14	0	1	8	0	5	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0006	13254	13	0	3	8	0	2	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0007	13245	9	1	6	0	0	2	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0008	13255	9	8	1	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0009	13250	9	0	1	8	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0010	13255	8	0	1	6	0	1	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0011	13220	8	7	0	1	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0012	13254	4	0	0	1	0	3	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0013	13221	4	4	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0014	13249	4	4	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0015	13209	4	0	0	4	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/1	t0016	13245	3	1	1	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0017	13211	3	0	3	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0018	13242	3	3	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0019	13247	3	3	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0020	13256	3	3	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0021	13256	3	1	2	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0022	13252	3	0	0	2	0	1	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0023	13245	2	0	2	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0024	13253	2	0	1	0	1	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0025	13254	2	0	0	2	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0026	13251	2	0	1	1	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0027	13250	2	0	1	1	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0028	13252	2	0	0	1	0	1	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0029	13212	2	0	1	0	0	1	copy fasta	MFSD4B	chr6	111254339	111285005