JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MFSD4B_chr6_111254339_111285005	0/0	t0080	13252	1	0	0	0	1	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0081	13252	1	0	0	1	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0082	13252	1	0	1	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0083	13250	1	0	1	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0084	13247	1	0	0	1	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0085	13236	1	0	1	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0086	13251	1	0	0	1	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0087	13246	1	0	0	1	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0088	13230	1	1	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0089	13255	1	0	0	0	0	1	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0090	13252	1	0	0	0	0	1	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0091	13255	1	0	0	0	0	1	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0092	13254	1	0	0	1	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0093	13253	1	0	0	1	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0094	13255	1	0	0	1	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0095	13253	1	0	1	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0096	13250	1	0	1	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0097	13251	1	0	0	1	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0098	13254	1	1	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0099	13211	1	1	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0100	13210	1	1	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0101	13250	1	0	0	1	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0102	13249	1	0	1	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0103	13219	1	0	0	0	1	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0104	13211	1	0	1	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0105	13212	1	0	1	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0106	13208	1	1	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0107	13252	1	1	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0108	13243	1	1	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0109	13209	1	1	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0110	13208	1	0	1	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0111	13208	1	1	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0112	13207	1	1	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0113	13206	1	1	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0114	13206	1	1	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0115	13206	1	1	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0116	13205	1	1	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0117	13251	1	0	1	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0118	13250	1	0	0	1	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0119	13251	1	1	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0120	13242	1	1	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0121	13243	1	1	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0122	13250	1	0	0	1	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0123	13249	1	0	0	1	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0124	13250	1	0	1	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0125	13250	1	0	0	1	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0126	13249	1	0	0	1	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0127	13248	1	0	0	0	1	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0128	13250	1	0	0	1	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0129	13250	1	0	1	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005