JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MFSD4B_chr6_111254339_111285005	0/0	t0130	13242	1	1	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0131	13249	1	0	0	0	1	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0132	13249	1	1	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0133	13250	1	1	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0134	13220	1	0	1	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0135	13254	1	0	0	1	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0136	13252	1	0	1	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0137	13251	1	0	1	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0138	13242	1	1	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0139	13211	1	1	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0140	13251	1	1	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0141	13249	1	1	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0142	13248	1	1	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0143	13249	1	0	1	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0144	13248	1	1	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0145	13215	1	1	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0146	13213	1	1	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0147	13251	1	0	0	0	0	1	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0148	13251	1	0	0	1	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0149	13252	1	0	0	1	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0150	13256	1	1	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0151	13252	1	0	0	1	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0152	13252	1	0	0	1	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0153	13257	1	1	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0154	13253	1	0	0	1	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0155	13257	1	1	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0156	13252	1	0	0	1	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0157	13253	1	0	0	1	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0158	13252	1	0	0	1	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0159	13259	1	1	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0160	13257	1	1	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0161	13253	1	0	0	1	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0162	13251	1	0	0	1	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0163	13246	1	1	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0164	13243	1	0	0	1	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0165	13235	1	0	0	1	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0166	13256	1	0	0	0	0	1	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0167	13250	1	0	0	1	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0168	13252	1	0	0	1	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0169	13253	1	0	0	1	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0170	13255	1	1	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0171	13254	1	1	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0172	13251	1	0	0	1	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0173	13250	1	0	0	1	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0174	13245	1	1	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0175	13212	1	0	0	1	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	t0176	13211	1	0	0	1	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD5_chr12_53247095_53259406	0/1	t0001	411	261	66	45	117	4	28	copy fasta	MFSD5	chr12	53247095	53259406
MFSD5_chr12_53247095_53259406	1/0	t0002	411	109	16	25	41	13	13	copy fasta	MFSD5	chr12	53247095	53259406
MFSD5_chr12_53247095_53259406	0/0	t0003	411	28	0	0	26	0	2	copy fasta	MFSD5	chr12	53247095	53259406