JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MFSD5_chr12_53247095_53259406	0/0	t0004	411	11	9	0	0	1	1	copy fasta	MFSD5	chr12	53247095	53259406
MFSD5_chr12_53247095_53259406	0/0	t0005	411	1	1	0	0	0	0	copy fasta	MFSD5	chr12	53247095	53259406
MFSD6L_chr17_8792110_8804365	1/1	t0001	496	382	56	69	197	16	42	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	t0002	496	83	30	15	31	2	5	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	t0003	496	8	7	1	0	0	0	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	t0004	496	6	0	0	6	0	0	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	t0005	496	4	0	0	4	0	0	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	t0006	496	1	1	0	0	0	0	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	t0007	496	1	1	0	0	0	0	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	t0008	496	1	1	0	0	0	0	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	t0009	496	1	1	0	0	0	0	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	t0010	496	1	1	0	0	0	0	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	t0011	496	1	0	1	0	0	0	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	t0012	496	1	0	0	0	0	1	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6_chr2_190403355_190507314	0/1	t0001	2421	172	36	27	93	5	10	copy fasta	MFSD6	chr2	190403355	190507314
MFSD6_chr2_190403355_190507314	0/0	t0002	2421	81	18	9	47	2	5	copy fasta	MFSD6	chr2	190403355	190507314
MFSD6_chr2_190403355_190507314	0/0	t0003	2421	49	0	14	21	4	10	copy fasta	MFSD6	chr2	190403355	190507314
MFSD6_chr2_190403355_190507314	0/0	t0004	2421	6	0	5	0	0	1	copy fasta	MFSD6	chr2	190403355	190507314
MFSD6_chr2_190403355_190507314	0/0	t0005	2421	5	5	0	0	0	0	copy fasta	MFSD6	chr2	190403355	190507314
MFSD6_chr2_190403355_190507314	0/0	t0006	2421	4	0	0	4	0	0	copy fasta	MFSD6	chr2	190403355	190507314
MFSD6_chr2_190403355_190507314	0/0	t0007	2420	3	3	0	0	0	0	copy fasta	MFSD6	chr2	190403355	190507314
MFSD6_chr2_190403355_190507314	0/0	t0008	2421	3	3	0	0	0	0	copy fasta	MFSD6	chr2	190403355	190507314
MFSD6_chr2_190403355_190507314	0/0	t0009	2421	3	0	0	3	0	0	copy fasta	MFSD6	chr2	190403355	190507314
MFSD6_chr2_190403355_190507314	0/0	t0010	2419	2	2	0	0	0	0	copy fasta	MFSD6	chr2	190403355	190507314
MFSD6_chr2_190403355_190507314	0/0	t0011	2421	2	0	0	2	0	0	copy fasta	MFSD6	chr2	190403355	190507314
MFSD6_chr2_190403355_190507314	0/0	t0012	2421	2	2	0	0	0	0	copy fasta	MFSD6	chr2	190403355	190507314
MFSD6_chr2_190403355_190507314	0/0	t0013	2421	2	0	1	0	0	1	copy fasta	MFSD6	chr2	190403355	190507314
MFSD6_chr2_190403355_190507314	1/0	t0014	2421	1	0	0	0	0	0	copy fasta	MFSD6	chr2	190403355	190507314
MFSD6_chr2_190403355_190507314	0/0	t0015	2421	1	1	0	0	0	0	copy fasta	MFSD6	chr2	190403355	190507314
MFSD6_chr2_190403355_190507314	0/0	t0016	2421	1	0	0	0	1	0	copy fasta	MFSD6	chr2	190403355	190507314
MFSD6_chr2_190403355_190507314	0/0	t0017	2407	1	0	0	1	0	0	copy fasta	MFSD6	chr2	190403355	190507314
MFSD6_chr2_190403355_190507314	0/0	t0018	2421	1	0	0	1	0	0	copy fasta	MFSD6	chr2	190403355	190507314
MFSD6_chr2_190403355_190507314	0/0	t0019	2421	1	0	0	1	0	0	copy fasta	MFSD6	chr2	190403355	190507314
MFSD6_chr2_190403355_190507314	0/0	t0020	2421	1	0	0	0	0	1	copy fasta	MFSD6	chr2	190403355	190507314
MFSD6_chr2_190403355_190507314	0/0	t0021	2421	1	1	0	0	0	0	copy fasta	MFSD6	chr2	190403355	190507314
MFSD6_chr2_190403355_190507314	0/0	t0022	2419	1	1	0	0	0	0	copy fasta	MFSD6	chr2	190403355	190507314
MFSD6_chr2_190403355_190507314	0/0	t0023	2421	1	0	0	1	0	0	copy fasta	MFSD6	chr2	190403355	190507314
MFSD8_chr4_127912805_127970173	1/1	t0001	2866	242	65	36	97	12	30	copy fasta	MFSD8	chr4	127912805	127970173
MFSD8_chr4_127912805_127970173	0/0	t0002	2866	63	0	5	58	0	0	copy fasta	MFSD8	chr4	127912805	127970173
MFSD8_chr4_127912805_127970173	0/0	t0003	2866	11	11	0	0	0	0	copy fasta	MFSD8	chr4	127912805	127970173
MFSD8_chr4_127912805_127970173	0/0	t0004	2860	5	0	2	3	0	0	copy fasta	MFSD8	chr4	127912805	127970173
MFSD8_chr4_127912805_127970173	0/0	t0005	2866	4	4	0	0	0	0	copy fasta	MFSD8	chr4	127912805	127970173
MFSD8_chr4_127912805_127970173	0/0	t0006	2868	4	4	0	0	0	0	copy fasta	MFSD8	chr4	127912805	127970173
MFSD8_chr4_127912805_127970173	0/0	t0007	2866	4	0	0	4	0	0	copy fasta	MFSD8	chr4	127912805	127970173
MFSD8_chr4_127912805_127970173	0/0	t0008	2866	3	0	0	3	0	0	copy fasta	MFSD8	chr4	127912805	127970173
MFSD8_chr4_127912805_127970173	0/0	t0009	2866	2	0	2	0	0	0	copy fasta	MFSD8	chr4	127912805	127970173
MFSD8_chr4_127912805_127970173	0/0	t0010	2866	2	1	1	0	0	0	copy fasta	MFSD8	chr4	127912805	127970173
MFSD8_chr4_127912805_127970173	0/0	t0011	2866	2	0	0	2	0	0	copy fasta	MFSD8	chr4	127912805	127970173
MFSD8_chr4_127912805_127970173	0/0	t0012	2866	1	1	0	0	0	0	copy fasta	MFSD8	chr4	127912805	127970173
MFSD8_chr4_127912805_127970173	0/0	t0013	2866	1	0	0	1	0	0	copy fasta	MFSD8	chr4	127912805	127970173