JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MFSD8_chr4_127912805_127970173	0/0	t0014	2866	1	1	0	0	0	0	copy fasta	MFSD8	chr4	127912805	127970173
MFSD8_chr4_127912805_127970173	0/0	t0015	2866	1	1	0	0	0	0	copy fasta	MFSD8	chr4	127912805	127970173
MFSD8_chr4_127912805_127970173	0/0	t0016	2866	1	1	0	0	0	0	copy fasta	MFSD8	chr4	127912805	127970173
MFSD8_chr4_127912805_127970173	0/0	t0017	2866	1	0	0	1	0	0	copy fasta	MFSD8	chr4	127912805	127970173
MFSD8_chr4_127912805_127970173	0/0	t0018	2866	1	1	0	0	0	0	copy fasta	MFSD8	chr4	127912805	127970173
MFSD8_chr4_127912805_127970173	0/0	t0019	2866	1	0	0	1	0	0	copy fasta	MFSD8	chr4	127912805	127970173
MFSD8_chr4_127912805_127970173	0/0	t0020	2866	1	1	0	0	0	0	copy fasta	MFSD8	chr4	127912805	127970173
MFSD8_chr4_127912805_127970173	0/0	t0021	2866	1	0	0	1	0	0	copy fasta	MFSD8	chr4	127912805	127970173
MFSD8_chr4_127912805_127970173	0/0	t0022	2866	1	1	0	0	0	0	copy fasta	MFSD8	chr4	127912805	127970173
MFSD8_chr4_127912805_127970173	0/0	t0023	2866	1	0	0	1	0	0	copy fasta	MFSD8	chr4	127912805	127970173
MFSD9_chr2_102709630_102741888	0/0	t0001	3869	112	13	21	65	4	9	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	1/0	t0002	3869	79	17	11	36	5	9	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	t0003	3869	51	2	15	29	1	4	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/1	t0004	3868	35	4	21	0	5	4	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	t0005	3869	29	3	2	17	0	7	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	t0006	3869	8	0	0	7	0	1	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	t0007	3869	7	7	0	0	0	0	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	t0008	3866	5	5	0	0	0	0	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	t0009	3869	5	0	0	5	0	0	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	t0010	3869	5	5	0	0	0	0	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	t0011	3868	4	4	0	0	0	0	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	t0012	3869	4	4	0	0	0	0	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	t0013	3869	4	4	0	0	0	0	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	t0014	3869	3	2	1	0	0	0	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	t0015	3869	3	3	0	0	0	0	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	t0016	3868	3	0	0	3	0	0	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	t0017	3869	3	3	0	0	0	0	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	t0018	3869	3	0	0	3	0	0	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	t0019	3869	2	0	0	0	0	2	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	t0020	3869	2	0	0	2	0	0	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	t0021	3869	2	0	1	0	0	1	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	t0022	3869	2	2	0	0	0	0	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	t0023	3869	1	1	0	0	0	0	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	t0024	3869	1	1	0	0	0	0	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	t0025	3868	1	1	0	0	0	0	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	t0026	3869	1	1	0	0	0	0	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	t0027	3869	1	0	0	1	0	0	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	t0028	3869	1	0	0	1	0	0	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	t0029	3869	1	0	0	1	0	0	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	t0030	3869	1	0	0	1	0	0	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	t0031	3868	1	1	0	0	0	0	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	t0032	3869	1	0	0	1	0	0	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	t0033	3869	1	0	0	0	1	0	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	t0034	3869	1	1	0	0	0	0	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	t0035	3869	1	0	0	1	0	0	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	t0036	3869	1	0	0	0	0	1	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	t0037	3869	1	0	0	1	0	0	copy fasta	MFSD9	chr2	102709630	102741888
MGAM2_chr7_142106718_142227324	0/1	t0001	356	319	72	54	146	14	32	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	t0002	356	7	7	0	0	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	t0003	356	2	1	1	0	0	0	copy fasta	MGAM2	chr7	142106718	142227324