JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MGAM2_chr7_142106718_142227324	0/0	t0004	356	1	0	1	0	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM_chr7_141990879_142111747	1/1	t0001	911	303	56	58	132	14	41	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	t0002	911	9	9	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	t0003	911	3	3	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	t0004	911	1	0	0	0	0	1	copy fasta	MGAM	chr7	141990879	142111747
MGARP_chr4_139261165_139285225	1/1	t0001	502	337	88	60	139	16	32	copy fasta	MGARP	chr4	139261165	139285225
MGARP_chr4_139261165_139285225	0/0	t0002	502	7	0	0	6	0	1	copy fasta	MGARP	chr4	139261165	139285225
MGARP_chr4_139261165_139285225	0/0	t0003	503	6	2	2	2	0	0	copy fasta	MGARP	chr4	139261165	139285225
MGARP_chr4_139261165_139285225	0/0	t0004	502	5	2	0	3	0	0	copy fasta	MGARP	chr4	139261165	139285225
MGARP_chr4_139261165_139285225	0/0	t0005	506	3	0	1	0	0	2	copy fasta	MGARP	chr4	139261165	139285225
MGARP_chr4_139261165_139285225	0/0	t0006	502	2	2	0	0	0	0	copy fasta	MGARP	chr4	139261165	139285225
MGARP_chr4_139261165_139285225	0/0	t0007	502	2	2	0	0	0	0	copy fasta	MGARP	chr4	139261165	139285225
MGARP_chr4_139261165_139285225	0/0	t0008	502	1	0	1	0	0	0	copy fasta	MGARP	chr4	139261165	139285225
MGARP_chr4_139261165_139285225	0/0	t0009	502	1	0	0	0	0	1	copy fasta	MGARP	chr4	139261165	139285225
MGAT1_chr5_180779780_180807806	1/0	t0001	7108	67	3	21	31	8	3	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0002	7105	21	0	3	13	1	4	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0003	7108	19	0	1	18	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0004	7108	19	0	3	15	0	1	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0005	7108	15	1	6	7	0	1	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0006	7050	14	13	1	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0007	7108	13	0	3	3	0	7	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0008	7108	12	0	0	7	0	5	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0009	7108	10	3	2	3	0	2	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0010	7108	10	0	0	10	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0011	7133	10	0	0	10	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0012	7108	8	0	0	8	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0013	7162	7	0	0	7	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0014	7108	6	0	4	0	1	1	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0015	7108	6	6	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0016	7044	6	6	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0017	7108	6	0	0	6	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0018	7108	5	0	4	0	1	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0019	7108	4	0	0	4	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0020	7108	4	1	2	0	1	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0021	7050	3	3	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0022	7108	3	0	3	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0023	7108	3	2	1	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0024	7049	3	3	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0025	7108	3	0	0	3	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0026	7076	3	0	0	1	0	2	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0027	7050	2	2	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0028	7044	2	2	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0029	7107	2	2	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0030	7107	2	2	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0031	7108	2	0	0	0	0	2	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0032	7107	2	0	0	0	0	2	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0033	7108	2	0	0	2	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0034	7107	2	0	0	2	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0035	7108	2	0	0	2	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0036	7108	2	0	0	2	0	0	copy fasta	MGAT1	chr5	180779780	180807806