Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARHGAP29_chr1_94163905_94242584	0/0	t0022	5173	2	2	0	0	0	0	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	t0023	5171	2	0	1	1	0	0	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	t0024	5167	2	2	0	0	0	0	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	t0025	5169	2	0	1	0	0	1	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	t0026	5169	1	0	0	0	0	1	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	t0027	5169	1	0	1	0	0	0	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	t0028	5179	1	0	1	0	0	0	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	t0029	5173	1	0	0	1	0	0	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	t0030	5173	1	0	0	1	0	0	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	t0031	5169	1	0	0	1	0	0	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	t0032	5175	1	1	0	0	0	0	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	t0033	5173	1	0	1	0	0	0	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	t0034	5169	1	0	0	1	0	0	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	t0035	5169	1	1	0	0	0	0	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	t0036	5169	1	1	0	0	0	0	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	t0037	5171	1	1	0	0	0	0	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	t0038	5169	1	1	0	0	0	0	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	t0039	5175	1	0	0	1	0	0	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	t0040	5171	1	1	0	0	0	0	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	t0041	5167	1	1	0	0	0	0	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	t0042	5171	1	0	0	0	0	1	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	t0043	5167	1	0	0	0	0	1	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP29_chr1_94163905_94242584	0/0	t0044	5167	1	1	0	0	0	0	copy fasta	ARHGAP29	chr1	94163905	94242584
ARHGAP30_chr1_161041946_161074891	1/1	t0001	1037	365	59	71	173	18	42	copy fasta	ARHGAP30	chr1	161041946	161074891
ARHGAP30_chr1_161041946_161074891	0/0	t0002	1037	8	8	0	0	0	0	copy fasta	ARHGAP30	chr1	161041946	161074891
ARHGAP30_chr1_161041946_161074891	0/0	t0003	1037	4	0	0	2	0	2	copy fasta	ARHGAP30	chr1	161041946	161074891
ARHGAP30_chr1_161041946_161074891	0/0	t0004	1037	4	3	1	0	0	0	copy fasta	ARHGAP30	chr1	161041946	161074891
ARHGAP30_chr1_161041946_161074891	0/0	t0005	1037	4	0	0	4	0	0	copy fasta	ARHGAP30	chr1	161041946	161074891
ARHGAP30_chr1_161041946_161074891	0/0	t0006	1037	2	0	0	0	0	2	copy fasta	ARHGAP30	chr1	161041946	161074891
ARHGAP30_chr1_161041946_161074891	0/0	t0007	1037	1	0	0	1	0	0	copy fasta	ARHGAP30	chr1	161041946	161074891
ARHGAP30_chr1_161041946_161074891	0/0	t0008	1037	1	1	0	0	0	0	copy fasta	ARHGAP30	chr1	161041946	161074891
ARHGAP30_chr1_161041946_161074891	0/0	t0009	1037	1	1	0	0	0	0	copy fasta	ARHGAP30	chr1	161041946	161074891
ARHGAP31_chr3_119289383_119425714	0/0	t0001	4974	42	25	3	11	0	3	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	1/1	t0002	4973	25	2	4	12	0	5	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0003	4974	21	3	5	8	1	4	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0004	4974	19	6	1	8	0	4	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0005	4974	18	0	3	10	2	3	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0006	4973	18	0	5	10	1	2	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0007	4974	17	1	4	10	0	2	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0008	4973	17	0	3	13	0	1	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0009	4973	12	2	0	6	2	2	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0010	4974	10	0	2	3	1	4	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0011	4974	10	0	7	2	0	1	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0012	4974	7	4	2	1	0	0	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0013	4970	5	4	1	0	0	0	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0014	4974	5	5	0	0	0	0	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0015	4974	5	5	0	0	0	0	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0016	4974	5	0	0	5	0	0	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0017	4973	4	0	1	3	0	0	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0018	4974	4	0	0	1	0	3	copy fasta	ARHGAP31	chr3	119289383	119425714