JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MGAT1_chr5_180779780_180807806	0/0	t0037	7108	2	0	0	2	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0038	7108	2	0	0	2	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0039	7108	2	0	0	0	0	2	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0040	7108	2	0	0	2	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0041	7079	2	0	0	2	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0042	7079	2	0	0	2	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0043	7049	2	2	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0044	7020	2	2	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0045	7108	2	0	2	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0046	7105	2	0	0	0	2	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0047	7105	2	0	2	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0048	7108	2	0	0	0	2	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0049	7107	1	1	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0050	7108	1	0	0	1	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0051	7108	1	0	0	1	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0052	7107	1	1	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0053	7109	1	1	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0054	7133	1	1	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0055	7108	1	1	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0056	7079	1	1	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0057	7050	1	1	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0058	7102	1	0	1	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0059	7062	1	0	0	0	0	1	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0060	7062	1	0	0	0	0	1	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0061	7062	1	0	0	0	0	1	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0062	7107	1	1	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0063	7050	1	0	0	0	0	1	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0064	7130	1	1	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0065	7108	1	0	0	1	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0066	7049	1	1	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0067	7108	1	0	0	1	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0068	7107	1	1	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0069	7107	1	0	1	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0070	7107	1	1	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0071	7108	1	1	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0072	7166	1	0	0	0	0	1	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0073	7165	1	0	1	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0074	7102	1	0	0	0	0	1	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0075	7108	1	1	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0076	7108	1	0	0	1	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0077	7108	1	0	0	1	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0078	7108	1	0	0	1	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0079	7108	1	0	0	0	1	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0080	7050	1	0	0	1	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0081	7079	1	0	0	1	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0082	7044	1	1	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0083	7107	1	0	0	0	0	1	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0084	7102	1	0	1	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0085	7108	1	0	0	0	0	1	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0086	7108	1	1	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806