JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MGAT1_chr5_180779780_180807806	0/0	t0087	7102	1	0	1	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0088	7108	1	0	0	1	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0089	7108	1	0	0	1	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0090	7108	1	0	0	0	0	1	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0091	7108	1	0	0	1	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0092	7108	1	0	1	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0093	7108	1	0	0	1	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0094	7108	1	0	1	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0095	7108	1	0	0	0	0	1	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0096	7108	1	0	0	1	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0097	7108	1	0	0	0	1	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0098	7108	1	0	0	0	0	1	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0099	7108	1	0	0	0	0	1	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0100	7108	1	0	0	1	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0101	7108	1	1	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0102	7102	1	1	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0103	7108	1	0	0	1	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0104	7108	1	0	0	0	0	1	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0105	7108	1	0	1	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0106	7108	1	0	0	1	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0107	7078	1	0	0	0	0	1	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0108	7079	1	0	0	1	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0109	7079	1	0	1	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0110	7079	1	0	0	1	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0111	7044	1	1	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0112	7043	1	1	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0113	7049	1	1	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0114	7049	1	1	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0115	7044	1	0	1	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0116	7050	1	1	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0117	7050	1	1	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0118	7050	1	1	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0119	7050	1	1	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0120	7050	1	1	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0121	7050	1	1	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0122	7049	1	1	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0123	7049	1	1	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0124	7049	1	1	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0125	7049	1	1	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0126	7049	1	1	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0127	7049	1	1	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0128	7050	1	0	1	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0129	7050	1	1	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0130	7050	1	1	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0131	7015	1	1	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0132	7108	1	0	0	1	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0133	7050	1	0	0	0	0	1	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0134	7108	1	0	1	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0135	7108	1	0	0	1	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/1	t0136	7108	1	0	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806