JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MGAT1_chr5_180779780_180807806	0/0	t0137	7101	1	0	0	0	0	1	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0138	7101	1	1	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0139	7133	1	0	0	1	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0140	7049	1	1	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0141	7049	1	1	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0142	7105	1	0	0	0	0	1	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0143	7105	1	0	0	0	0	1	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0144	7105	1	0	1	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0145	7105	1	1	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0146	7105	1	0	0	1	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0147	7106	1	0	1	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0148	7047	1	1	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0149	7108	1	0	0	1	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0150	7105	1	0	1	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0151	7108	1	0	1	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0152	7108	1	0	0	1	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0153	7108	1	0	0	1	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0154	7133	1	0	0	1	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0155	7133	1	0	0	1	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0156	7133	1	0	0	1	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0157	7133	1	0	0	1	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0158	7133	1	0	0	1	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0159	7133	1	0	0	1	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	t0160	7049	1	1	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT2_chr14_49615799_49628481	1/0	t0001	1340	247	76	38	101	10	21	copy fasta	MGAT2	chr14	49615799	49628481
MGAT2_chr14_49615799_49628481	0/1	t0002	1340	81	10	25	23	7	15	copy fasta	MGAT2	chr14	49615799	49628481
MGAT2_chr14_49615799_49628481	0/0	t0003	1340	9	9	0	0	0	0	copy fasta	MGAT2	chr14	49615799	49628481
MGAT2_chr14_49615799_49628481	0/0	t0004	1340	7	0	3	0	1	3	copy fasta	MGAT2	chr14	49615799	49628481
MGAT2_chr14_49615799_49628481	0/0	t0005	1340	3	0	0	3	0	0	copy fasta	MGAT2	chr14	49615799	49628481
MGAT2_chr14_49615799_49628481	0/0	t0006	1340	2	0	0	2	0	0	copy fasta	MGAT2	chr14	49615799	49628481
MGAT2_chr14_49615799_49628481	0/0	t0007	1340	2	1	0	1	0	0	copy fasta	MGAT2	chr14	49615799	49628481
MGAT2_chr14_49615799_49628481	0/0	t0008	1340	1	0	1	0	0	0	copy fasta	MGAT2	chr14	49615799	49628481
MGAT2_chr14_49615799_49628481	0/0	t0009	1340	1	0	1	0	0	0	copy fasta	MGAT2	chr14	49615799	49628481
MGAT2_chr14_49615799_49628481	0/0	t0010	1340	1	0	0	0	0	1	copy fasta	MGAT2	chr14	49615799	49628481
MGAT2_chr14_49615799_49628481	0/0	t0011	1340	1	0	0	1	0	0	copy fasta	MGAT2	chr14	49615799	49628481
MGAT2_chr14_49615799_49628481	0/0	t0012	1340	1	0	0	1	0	0	copy fasta	MGAT2	chr14	49615799	49628481
MGAT3_chr22_39452012_39497194	0/1	t0001	3792	148	28	47	36	13	23	copy fasta	MGAT3	chr22	39452012	39497194
MGAT3_chr22_39452012_39497194	0/0	t0002	3792	38	9	4	19	2	4	copy fasta	MGAT3	chr22	39452012	39497194
MGAT3_chr22_39452012_39497194	0/0	t0003	3792	23	11	3	1	0	8	copy fasta	MGAT3	chr22	39452012	39497194
MGAT3_chr22_39452012_39497194	1/0	t0004	3792	21	2	8	3	1	6	copy fasta	MGAT3	chr22	39452012	39497194
MGAT3_chr22_39452012_39497194	0/0	t0005	3792	12	12	0	0	0	0	copy fasta	MGAT3	chr22	39452012	39497194
MGAT3_chr22_39452012_39497194	0/0	t0006	3792	9	7	1	0	1	0	copy fasta	MGAT3	chr22	39452012	39497194
MGAT3_chr22_39452012_39497194	0/0	t0007	3791	7	7	0	0	0	0	copy fasta	MGAT3	chr22	39452012	39497194
MGAT3_chr22_39452012_39497194	0/0	t0008	3792	5	5	0	0	0	0	copy fasta	MGAT3	chr22	39452012	39497194
MGAT3_chr22_39452012_39497194	0/0	t0009	3792	4	0	0	4	0	0	copy fasta	MGAT3	chr22	39452012	39497194
MGAT3_chr22_39452012_39497194	0/0	t0010	3792	3	3	0	0	0	0	copy fasta	MGAT3	chr22	39452012	39497194
MGAT3_chr22_39452012_39497194	0/0	t0011	3795	3	1	2	0	0	0	copy fasta	MGAT3	chr22	39452012	39497194
MGAT3_chr22_39452012_39497194	0/0	t0012	3792	2	0	2	0	0	0	copy fasta	MGAT3	chr22	39452012	39497194
MGAT3_chr22_39452012_39497194	0/0	t0013	3793	2	0	1	1	0	0	copy fasta	MGAT3	chr22	39452012	39497194
MGAT3_chr22_39452012_39497194	0/0	t0014	3792	2	2	0	0	0	0	copy fasta	MGAT3	chr22	39452012	39497194