JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MGAT3_chr22_39452012_39497194	0/0	t0015	3792	2	2	0	0	0	0	copy fasta	MGAT3	chr22	39452012	39497194
MGAT3_chr22_39452012_39497194	0/0	t0016	3792	1	1	0	0	0	0	copy fasta	MGAT3	chr22	39452012	39497194
MGAT3_chr22_39452012_39497194	0/0	t0017	3793	1	0	1	0	0	0	copy fasta	MGAT3	chr22	39452012	39497194
MGAT3_chr22_39452012_39497194	0/0	t0018	3792	1	0	1	0	0	0	copy fasta	MGAT3	chr22	39452012	39497194
MGAT3_chr22_39452012_39497194	0/0	t0019	3792	1	1	0	0	0	0	copy fasta	MGAT3	chr22	39452012	39497194
MGAT3_chr22_39452012_39497194	0/0	t0020	3792	1	1	0	0	0	0	copy fasta	MGAT3	chr22	39452012	39497194
MGAT3_chr22_39452012_39497194	0/0	t0021	3791	1	0	1	0	0	0	copy fasta	MGAT3	chr22	39452012	39497194
MGAT3_chr22_39452012_39497194	0/0	t0022	3792	1	0	1	0	0	0	copy fasta	MGAT3	chr22	39452012	39497194
MGAT3_chr22_39452012_39497194	0/0	t0023	3792	1	0	0	0	0	1	copy fasta	MGAT3	chr22	39452012	39497194
MGAT3_chr22_39452012_39497194	0/0	t0024	3792	1	0	0	0	1	0	copy fasta	MGAT3	chr22	39452012	39497194
MGAT3_chr22_39452012_39497194	0/0	t0025	3792	1	0	0	1	0	0	copy fasta	MGAT3	chr22	39452012	39497194
MGAT3_chr22_39452012_39497194	0/0	t0026	3793	1	0	0	1	0	0	copy fasta	MGAT3	chr22	39452012	39497194
MGAT3_chr22_39452012_39497194	0/0	t0027	3796	1	1	0	0	0	0	copy fasta	MGAT3	chr22	39452012	39497194
MGAT3_chr22_39452012_39497194	0/0	t0028	3792	1	0	1	0	0	0	copy fasta	MGAT3	chr22	39452012	39497194
MGAT3_chr22_39452012_39497194	0/0	t0029	3792	1	1	0	0	0	0	copy fasta	MGAT3	chr22	39452012	39497194
MGAT3_chr22_39452012_39497194	0/0	t0030	3792	1	0	0	0	0	1	copy fasta	MGAT3	chr22	39452012	39497194
MGAT3_chr22_39452012_39497194	0/0	t0031	3792	1	0	0	1	0	0	copy fasta	MGAT3	chr22	39452012	39497194
MGAT3_chr22_39452012_39497194	0/0	t0032	3792	1	0	0	1	0	0	copy fasta	MGAT3	chr22	39452012	39497194
MGAT3_chr22_39452012_39497194	0/0	t0033	3792	1	0	0	1	0	0	copy fasta	MGAT3	chr22	39452012	39497194
MGAT3_chr22_39452012_39497194	0/0	t0034	3792	1	0	0	1	0	0	copy fasta	MGAT3	chr22	39452012	39497194
MGAT3_chr22_39452012_39497194	0/0	t0035	3792	1	0	0	1	0	0	copy fasta	MGAT3	chr22	39452012	39497194
MGAT3_chr22_39452012_39497194	0/0	t0036	3792	1	1	0	0	0	0	copy fasta	MGAT3	chr22	39452012	39497194
MGAT3_chr22_39452012_39497194	0/0	t0037	3792	1	0	0	1	0	0	copy fasta	MGAT3	chr22	39452012	39497194
MGAT3_chr22_39452012_39497194	0/0	t0038	3792	1	1	0	0	0	0	copy fasta	MGAT3	chr22	39452012	39497194
MGAT3_chr22_39452012_39497194	0/0	t0039	3792	1	0	0	0	0	1	copy fasta	MGAT3	chr22	39452012	39497194
MGAT3_chr22_39452012_39497194	0/0	t0040	3792	1	0	1	0	0	0	copy fasta	MGAT3	chr22	39452012	39497194
MGAT4A_chr2_98614106_98736132	1/0	t0001	6781	88	13	24	32	4	14	copy fasta	MGAT4A	chr2	98614106	98736132
MGAT4A_chr2_98614106_98736132	0/0	t0002	6769	66	21	15	17	1	12	copy fasta	MGAT4A	chr2	98614106	98736132
MGAT4A_chr2_98614106_98736132	0/0	t0003	6769	19	3	5	11	0	0	copy fasta	MGAT4A	chr2	98614106	98736132
MGAT4A_chr2_98614106_98736132	0/0	t0004	6781	18	0	7	8	2	1	copy fasta	MGAT4A	chr2	98614106	98736132
MGAT4A_chr2_98614106_98736132	0/0	t0005	6769	12	0	1	8	0	3	copy fasta	MGAT4A	chr2	98614106	98736132
MGAT4A_chr2_98614106_98736132	0/1	t0006	6781	9	2	4	2	0	0	copy fasta	MGAT4A	chr2	98614106	98736132
MGAT4A_chr2_98614106_98736132	0/0	t0007	6781	6	0	1	3	0	2	copy fasta	MGAT4A	chr2	98614106	98736132
MGAT4A_chr2_98614106_98736132	0/0	t0008	6769	4	0	0	4	0	0	copy fasta	MGAT4A	chr2	98614106	98736132
MGAT4A_chr2_98614106_98736132	0/0	t0009	6781	3	3	0	0	0	0	copy fasta	MGAT4A	chr2	98614106	98736132
MGAT4A_chr2_98614106_98736132	0/0	t0010	6781	3	2	0	1	0	0	copy fasta	MGAT4A	chr2	98614106	98736132
MGAT4A_chr2_98614106_98736132	0/0	t0011	6767	3	3	0	0	0	0	copy fasta	MGAT4A	chr2	98614106	98736132
MGAT4A_chr2_98614106_98736132	0/0	t0012	6781	2	2	0	0	0	0	copy fasta	MGAT4A	chr2	98614106	98736132
MGAT4A_chr2_98614106_98736132	0/0	t0013	6769	2	2	0	0	0	0	copy fasta	MGAT4A	chr2	98614106	98736132
MGAT4A_chr2_98614106_98736132	0/0	t0014	6769	2	0	0	2	0	0	copy fasta	MGAT4A	chr2	98614106	98736132
MGAT4A_chr2_98614106_98736132	0/0	t0015	6781	1	1	0	0	0	0	copy fasta	MGAT4A	chr2	98614106	98736132
MGAT4A_chr2_98614106_98736132	0/0	t0016	6781	1	1	0	0	0	0	copy fasta	MGAT4A	chr2	98614106	98736132
MGAT4A_chr2_98614106_98736132	0/0	t0017	6781	1	0	0	0	1	0	copy fasta	MGAT4A	chr2	98614106	98736132
MGAT4A_chr2_98614106_98736132	0/0	t0018	6781	1	0	0	0	0	1	copy fasta	MGAT4A	chr2	98614106	98736132
MGAT4A_chr2_98614106_98736132	0/0	t0019	6781	1	0	0	1	0	0	copy fasta	MGAT4A	chr2	98614106	98736132
MGAT4A_chr2_98614106_98736132	0/0	t0020	6781	1	0	0	1	0	0	copy fasta	MGAT4A	chr2	98614106	98736132
MGAT4A_chr2_98614106_98736132	0/0	t0021	6781	1	0	0	1	0	0	copy fasta	MGAT4A	chr2	98614106	98736132
MGAT4A_chr2_98614106_98736132	0/0	t0022	6781	1	1	0	0	0	0	copy fasta	MGAT4A	chr2	98614106	98736132
MGAT4A_chr2_98614106_98736132	0/0	t0023	6781	1	0	0	1	0	0	copy fasta	MGAT4A	chr2	98614106	98736132
MGAT4A_chr2_98614106_98736132	0/0	t0024	6781	1	0	0	0	0	1	copy fasta	MGAT4A	chr2	98614106	98736132