JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MGAT4A_chr2_98614106_98736132	0/0	t0025	6781	1	0	1	0	0	0	copy fasta	MGAT4A	chr2	98614106	98736132
MGAT4A_chr2_98614106_98736132	0/0	t0026	6769	1	1	0	0	0	0	copy fasta	MGAT4A	chr2	98614106	98736132
MGAT4A_chr2_98614106_98736132	0/0	t0027	6767	1	1	0	0	0	0	copy fasta	MGAT4A	chr2	98614106	98736132
MGAT4A_chr2_98614106_98736132	0/0	t0028	6768	1	0	1	0	0	0	copy fasta	MGAT4A	chr2	98614106	98736132
MGAT4A_chr2_98614106_98736132	0/0	t0029	6769	1	0	0	1	0	0	copy fasta	MGAT4A	chr2	98614106	98736132
MGAT4A_chr2_98614106_98736132	0/0	t0030	6769	1	1	0	0	0	0	copy fasta	MGAT4A	chr2	98614106	98736132
MGAT4A_chr2_98614106_98736132	0/0	t0031	6769	1	0	0	1	0	0	copy fasta	MGAT4A	chr2	98614106	98736132
MGAT4A_chr2_98614106_98736132	0/0	t0032	6768	1	0	1	0	0	0	copy fasta	MGAT4A	chr2	98614106	98736132
MGAT4A_chr2_98614106_98736132	0/0	t0033	6769	1	0	0	1	0	0	copy fasta	MGAT4A	chr2	98614106	98736132
MGAT4A_chr2_98614106_98736132	0/0	t0034	6769	1	1	0	0	0	0	copy fasta	MGAT4A	chr2	98614106	98736132
MGAT4A_chr2_98614106_98736132	0/0	t0035	6769	1	0	0	1	0	0	copy fasta	MGAT4A	chr2	98614106	98736132
MGAT4A_chr2_98614106_98736132	0/0	t0036	6769	1	1	0	0	0	0	copy fasta	MGAT4A	chr2	98614106	98736132
MGAT4A_chr2_98614106_98736132	0/0	t0037	6769	1	1	0	0	0	0	copy fasta	MGAT4A	chr2	98614106	98736132
MGAT4A_chr2_98614106_98736132	0/0	t0038	6780	1	1	0	0	0	0	copy fasta	MGAT4A	chr2	98614106	98736132
MGAT4A_chr2_98614106_98736132	0/0	t0039	6781	1	1	0	0	0	0	copy fasta	MGAT4A	chr2	98614106	98736132
MGAT4B_chr5_179792610_179811866	1/1	t0001	719	337	76	69	136	14	40	copy fasta	MGAT4B	chr5	179792610	179811866
MGAT4B_chr5_179792610_179811866	0/0	t0002	722	55	12	7	33	0	3	copy fasta	MGAT4B	chr5	179792610	179811866
MGAT4B_chr5_179792610_179811866	0/0	t0003	719	3	0	0	3	0	0	copy fasta	MGAT4B	chr5	179792610	179811866
MGAT4B_chr5_179792610_179811866	0/0	t0004	722	3	0	0	3	0	0	copy fasta	MGAT4B	chr5	179792610	179811866
MGAT4B_chr5_179792610_179811866	0/0	t0005	719	3	3	0	0	0	0	copy fasta	MGAT4B	chr5	179792610	179811866
MGAT4B_chr5_179792610_179811866	0/0	t0006	719	2	2	0	0	0	0	copy fasta	MGAT4B	chr5	179792610	179811866
MGAT4B_chr5_179792610_179811866	0/0	t0007	719	2	0	0	2	0	0	copy fasta	MGAT4B	chr5	179792610	179811866
MGAT4B_chr5_179792610_179811866	0/0	t0008	719	1	0	0	1	0	0	copy fasta	MGAT4B	chr5	179792610	179811866
MGAT4B_chr5_179792610_179811866	0/0	t0009	719	1	0	0	1	0	0	copy fasta	MGAT4B	chr5	179792610	179811866
MGAT4B_chr5_179792610_179811866	0/0	t0010	719	1	0	0	1	0	0	copy fasta	MGAT4B	chr5	179792610	179811866
MGAT4B_chr5_179792610_179811866	0/0	t0011	719	1	0	0	1	0	0	copy fasta	MGAT4B	chr5	179792610	179811866
MGAT4B_chr5_179792610_179811866	0/0	t0012	719	1	0	0	1	0	0	copy fasta	MGAT4B	chr5	179792610	179811866
MGAT4B_chr5_179792610_179811866	0/0	t0013	719	1	1	0	0	0	0	copy fasta	MGAT4B	chr5	179792610	179811866
MGAT4B_chr5_179792610_179811866	0/0	t0014	719	1	0	0	0	0	1	copy fasta	MGAT4B	chr5	179792610	179811866
MGAT4C_chr12_85950667_86261391	0/0	t0001	23822	5	0	0	5	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0002	23824	4	0	0	3	0	1	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0003	23825	3	3	0	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0004	23811	3	0	1	0	1	1	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0005	23823	3	2	1	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0006	23835	2	0	2	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0007	23827	2	0	0	2	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0008	23824	2	0	0	2	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0009	23823	2	0	0	2	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0010	23825	2	1	0	0	0	1	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0011	23821	2	0	0	2	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0012	23827	2	0	1	1	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0013	23816	2	2	0	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0014	23830	2	0	0	0	1	1	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0015	23826	2	0	1	1	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0016	23827	2	1	1	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0017	23828	2	2	0	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0018	23834	2	2	0	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0019	23836	2	0	1	0	1	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0020	23833	2	0	2	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0021	23832	2	2	0	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391