JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MGAT4C_chr12_85950667_86261391	0/0	t0072	23835	1	0	1	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0073	23823	1	1	0	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0074	23814	1	1	0	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0075	23822	1	0	0	0	1	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0076	23811	1	1	0	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0077	23816	1	1	0	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0078	23817	1	0	0	0	1	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0079	23822	1	0	0	0	0	1	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0080	23819	1	0	1	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0081	23822	1	0	0	1	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0082	23821	1	0	0	1	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0083	23827	1	0	0	1	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0084	23817	1	0	0	1	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0085	23829	1	0	0	0	0	1	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0086	23824	1	0	1	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0087	23823	1	0	0	1	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0088	23823	1	0	1	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0089	23824	1	0	1	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0090	23819	1	0	1	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0091	23814	1	1	0	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0092	23824	1	1	0	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0093	23824	1	0	1	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0094	23834	1	0	0	0	0	1	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0095	23835	1	1	0	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0096	23825	1	1	0	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0097	23823	1	0	1	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0098	23825	1	1	0	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0099	23827	1	1	0	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0100	23825	1	1	0	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0101	23826	1	0	0	1	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0102	23826	1	0	1	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0103	23823	1	0	0	1	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0104	23826	1	0	1	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0105	23825	1	1	0	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0106	23836	1	0	0	1	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0107	23817	1	0	0	1	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0108	23822	1	0	0	1	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0109	23827	1	0	0	1	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0110	23823	1	0	1	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0111	23823	1	0	0	1	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0112	23833	1	0	0	1	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0113	23818	1	1	0	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0114	23838	1	0	1	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0115	23827	1	1	0	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0116	23828	1	1	0	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0117	23825	1	1	0	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0118	23828	1	0	0	1	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0119	23828	1	0	0	1	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0120	23825	1	1	0	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0121	23839	1	1	0	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391