JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MGAT4C_chr12_85950667_86261391	0/0	t0122	23829	1	1	0	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0123	23840	1	0	0	0	1	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0124	23847	1	0	1	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0125	23831	1	1	0	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0126	23824	1	1	0	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0127	23828	1	1	0	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0128	23830	1	1	0	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0129	23834	1	1	0	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0130	23832	1	0	1	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0131	23838	1	0	1	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0132	23839	1	1	0	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0133	23839	1	0	0	0	0	1	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0134	23845	1	0	0	0	0	1	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0135	23834	1	1	0	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0136	23837	1	1	0	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0137	23838	1	1	0	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0138	23837	1	0	0	0	0	1	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0139	23842	1	0	1	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0140	23823	1	0	0	0	0	1	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0141	23866	1	0	0	1	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0142	23826	1	0	0	0	0	1	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0143	23822	1	0	0	0	1	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0144	23828	1	0	0	1	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0145	23829	1	0	0	1	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0146	23831	1	0	0	1	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0147	23822	1	1	0	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0148	23832	1	0	0	1	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0149	23824	1	0	1	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0150	23829	1	0	0	0	1	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	t0151	23828	1	1	0	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4D_chr4_140437262_140503293	0/0	t0001	1242	146	27	32	70	4	13	copy fasta	MGAT4D	chr4	140437262	140503293
MGAT4D_chr4_140437262_140503293	0/0	t0002	1242	84	17	17	34	1	15	copy fasta	MGAT4D	chr4	140437262	140503293
MGAT4D_chr4_140437262_140503293	0/0	t0003	1246	56	4	10	38	2	2	copy fasta	MGAT4D	chr4	140437262	140503293
MGAT4D_chr4_140437262_140503293	0/1	t0004	1246	20	16	2	0	1	0	copy fasta	MGAT4D	chr4	140437262	140503293
MGAT4D_chr4_140437262_140503293	1/0	t0005	1246	12	10	1	0	0	0	copy fasta	MGAT4D	chr4	140437262	140503293
MGAT4D_chr4_140437262_140503293	0/0	t0006	1246	6	6	0	0	0	0	copy fasta	MGAT4D	chr4	140437262	140503293
MGAT4D_chr4_140437262_140503293	0/0	t0007	1242	2	0	0	0	0	2	copy fasta	MGAT4D	chr4	140437262	140503293
MGAT4D_chr4_140437262_140503293	0/0	t0008	1242	1	0	0	1	0	0	copy fasta	MGAT4D	chr4	140437262	140503293
MGAT4D_chr4_140437262_140503293	0/0	t0009	1246	1	1	0	0	0	0	copy fasta	MGAT4D	chr4	140437262	140503293
MGAT4D_chr4_140437262_140503293	0/0	t0010	1242	1	0	0	1	0	0	copy fasta	MGAT4D	chr4	140437262	140503293
MGAT4D_chr4_140437262_140503293	0/0	t0011	1246	1	1	0	0	0	0	copy fasta	MGAT4D	chr4	140437262	140503293
MGAT4D_chr4_140437262_140503293	0/0	t0012	1242	1	0	0	1	0	0	copy fasta	MGAT4D	chr4	140437262	140503293
MGAT4D_chr4_140437262_140503293	0/0	t0013	1242	1	0	0	1	0	0	copy fasta	MGAT4D	chr4	140437262	140503293
MGAT5B_chr17_76863404_76955393	0/1	t0001	2181	91	9	13	52	1	15	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	t0002	2170	33	2	3	25	1	2	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	1/0	t0003	2182	31	9	7	10	1	3	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	t0004	2181	25	10	8	0	2	5	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	t0005	2181	18	3	13	0	2	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	t0006	2181	14	3	2	3	2	4	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	t0007	2182	13	4	1	0	1	7	copy fasta	MGAT5B	chr17	76863404	76955393