JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MGAT5B_chr17_76863404_76955393	0/0	t0008	2164	6	4	2	0	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	t0009	2181	5	5	0	0	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	t0010	2181	5	5	0	0	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	t0011	2177	4	3	1	0	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	t0012	2173	3	3	0	0	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	t0013	2181	3	0	3	0	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	t0014	2170	2	0	2	0	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	t0015	2177	2	2	0	0	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	t0016	2181	2	2	0	0	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	t0017	2181	1	0	1	0	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	t0018	2181	1	0	1	0	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	t0019	2181	1	1	0	0	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	t0020	2181	1	1	0	0	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	t0021	2170	1	0	1	0	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	t0022	2169	1	0	1	0	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	t0023	2181	1	0	1	0	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	t0024	2181	1	0	0	1	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	t0025	2181	1	0	0	0	1	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	t0026	2181	1	1	0	0	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	t0027	2181	1	0	0	0	1	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	t0028	2181	1	0	1	0	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	t0029	2182	1	1	0	0	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	t0030	2181	1	1	0	0	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	t0031	2181	1	0	1	0	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	t0032	2181	1	0	1	0	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	t0033	2181	1	0	0	1	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	t0034	2170	1	0	0	1	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	t0035	2181	1	0	1	0	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	t0036	2181	1	1	0	0	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	t0037	2182	1	0	0	1	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5_chr2_134249072_134459621	0/0	t0001	6077	25	10	4	10	0	1	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/1	t0002	6105	23	0	5	12	0	5	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0003	6103	14	8	1	4	1	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0004	6095	12	0	0	11	0	1	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0005	6103	11	2	1	8	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0006	6101	11	0	5	3	0	3	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0007	6105	9	3	0	6	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0008	6093	9	3	0	5	0	1	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0009	6103	9	1	3	2	0	3	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0010	6082	8	7	1	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0011	6082	8	0	1	6	0	1	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0012	6090	6	6	0	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0013	6103	6	0	0	2	2	2	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0014	6076	6	6	0	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0015	6107	6	0	1	5	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	1/0	t0016	6107	5	0	2	1	1	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0017	6105	3	0	0	0	0	3	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0018	6094	3	0	0	2	0	1	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0019	6099	3	0	3	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0020	6101	2	0	0	0	1	1	copy fasta	MGAT5	chr2	134249072	134459621