JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MGAT5_chr2_134249072_134459621	0/0	t0021	6105	2	2	0	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0022	6109	2	1	0	1	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0023	6085	2	2	0	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0024	6093	2	0	0	2	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0025	6101	2	0	1	0	0	1	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0026	6105	2	0	0	2	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0027	6105	2	0	0	2	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0028	6077	2	2	0	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0029	6095	2	2	0	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0030	6100	2	2	0	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0031	6101	2	0	0	2	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0032	6105	2	1	0	0	0	1	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0033	6105	2	0	0	2	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0034	6107	2	0	1	0	1	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0035	6107	2	0	0	2	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0036	6109	2	1	1	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0037	6107	2	0	2	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0038	6104	1	1	0	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0039	6100	1	1	0	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0040	6107	1	0	0	1	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0041	6081	1	1	0	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0042	6082	1	1	0	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0043	6082	1	1	0	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0044	6103	1	0	0	0	0	1	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0045	6087	1	1	0	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0046	6092	1	1	0	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0047	6093	1	0	0	1	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0048	6103	1	1	0	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0049	6107	1	0	1	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0050	6101	1	0	0	1	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0051	6101	1	0	1	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0052	6103	1	0	0	1	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0053	6105	1	0	1	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0054	6105	1	1	0	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0055	6105	1	1	0	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0056	6105	1	0	1	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0057	6107	1	0	0	1	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0058	6107	1	0	0	1	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0059	6107	1	0	1	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0060	6107	1	0	0	0	0	1	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0061	6109	1	0	1	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0062	6088	1	0	0	1	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0063	6102	1	0	0	1	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0064	6104	1	0	0	1	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0065	6077	1	1	0	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0066	6085	1	1	0	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0067	6087	1	1	0	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0068	6087	1	1	0	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0069	6095	1	0	0	0	0	1	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0070	6103	1	0	0	1	0	0	copy fasta	MGAT5	chr2	134249072	134459621