Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARHGAP31_chr3_119289383_119425714	0/0	t0019	4973	4	1	1	1	0	1	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0020	4974	4	2	0	0	0	2	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0021	4974	3	3	0	0	0	0	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0022	4970	2	2	0	0	0	0	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0023	4974	2	2	0	0	0	0	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0024	4974	2	0	0	0	0	2	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0025	4973	2	0	1	0	0	1	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0026	4973	2	0	2	0	0	0	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0027	4970	2	0	0	2	0	0	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0028	4974	2	2	0	0	0	0	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0029	4973	2	2	0	0	0	0	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0030	4973	2	1	0	0	0	1	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0031	4973	2	0	2	0	0	0	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0032	4974	1	0	1	0	0	0	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0033	4974	1	0	0	1	0	0	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0034	4974	1	0	1	0	0	0	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0035	4973	1	1	0	0	0	0	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0036	4970	1	0	0	1	0	0	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0037	4974	1	0	0	0	0	1	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0038	4974	1	1	0	0	0	0	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0039	4973	1	1	0	0	0	0	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0040	4973	1	1	0	0	0	0	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0041	4973	1	0	1	0	0	0	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0042	4973	1	0	0	0	1	0	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0043	4973	1	0	0	1	0	0	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0044	4974	1	1	0	0	0	0	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0045	4973	1	1	0	0	0	0	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0046	4974	1	0	0	1	0	0	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0047	4970	1	0	0	1	0	0	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0048	4970	1	0	0	1	0	0	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0049	4974	1	1	0	0	0	0	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0050	4974	1	0	0	0	0	1	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0051	4974	1	0	0	0	0	1	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0052	4973	1	1	0	0	0	0	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0053	4973	1	0	1	0	0	0	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0054	4974	1	1	0	0	0	0	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0055	4974	1	0	0	1	0	0	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0056	4974	1	1	0	0	0	0	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0057	4974	1	1	0	0	0	0	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0058	4974	1	1	0	0	0	0	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0059	4974	1	0	1	0	0	0	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0060	4973	1	1	0	0	0	0	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0061	4973	1	1	0	0	0	0	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0062	4973	1	0	0	1	0	0	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0063	4973	1	0	1	0	0	0	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0064	4974	1	0	0	1	0	0	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0065	4974	1	0	0	1	0	0	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP31_chr3_119289383_119425714	0/0	t0066	4974	1	0	1	0	0	0	copy fasta	ARHGAP31	chr3	119289383	119425714
ARHGAP32_chr11_128960060_129197325	0/0	t0001	3975	157	38	30	75	2	12	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	t0002	3975	67	12	6	43	2	4	copy fasta	ARHGAP32	chr11	128960060	129197325