JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MGAT5_chr2_134249072_134459621	0/0	t0071	6103	1	0	0	1	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0072	6105	1	0	0	0	0	1	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0073	6105	1	0	0	1	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0074	6090	1	1	0	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0075	6101	1	0	0	1	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0076	6105	1	0	0	1	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0077	6107	1	0	0	0	0	1	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0078	6077	1	0	0	1	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0079	6077	1	1	0	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0080	6101	1	1	0	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0081	6095	1	1	0	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0082	6095	1	1	0	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0083	6102	1	0	1	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0084	6103	1	1	0	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0085	6107	1	1	0	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0086	6105	1	1	0	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0087	6097	1	0	0	1	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0088	6099	1	0	0	1	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0089	6099	1	0	0	1	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0090	6099	1	0	1	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0091	6099	1	1	0	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0092	6101	1	0	1	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0093	6101	1	0	1	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0094	6103	1	0	1	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0095	6103	1	1	0	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0096	6103	1	0	0	1	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0097	6103	1	1	0	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0098	6105	1	0	0	0	0	1	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0099	6105	1	0	1	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0100	6105	1	0	0	1	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0101	6105	1	0	0	1	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0102	6107	1	1	0	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0103	6107	1	1	0	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0104	6109	1	0	0	1	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0105	6105	1	0	0	0	0	1	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	t0106	6107	1	0	0	0	0	1	copy fasta	MGAT5	chr2	134249072	134459621
MGA_chr15_41655405_41774940	0/1	t0001	2851	106	27	29	33	3	13	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	t0002	2852	89	13	18	42	5	11	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	t0003	2851	30	9	0	20	0	1	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	t0004	2854	11	0	7	1	1	2	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	1/0	t0005	2849	10	9	0	0	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	t0006	2849	9	8	1	0	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	t0007	2852	6	4	1	0	0	1	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	t0008	2850	6	4	1	1	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	t0009	2853	5	2	0	2	0	1	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	t0010	2850	4	0	1	0	0	3	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	t0011	2853	3	0	2	0	1	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	t0012	2848	2	2	0	0	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	t0013	2850	2	1	0	1	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	t0014	2852	1	0	0	1	0	0	copy fasta	MGA	chr15	41655405	41774940